Analysis of interatomic Contacts of Structural Units in PDB entry:
9PDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PDZ entry

There is 1 chain in PDB entry 9PDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9PDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
37 43Right-handed 310
Helix 3
AA3
A
51 56Right-handed 310
Helix 4
AA4
A
57 59Right-handed 310
Helix 5
AA5
A
66 71Right-handed alpha
Helix 6
AA6
A
74 83Right-handed alpha
Helix 7
AA7
A
84 89Right-handed 310
Helix 8
AA8
A
112 122Right-handed 310
Helix 9
AA9
A
130 140Right-handed alpha
Helix 10
AB1
A
145 153Right-handed alpha
Helix 11
AB2
A
161 169Right-handed alpha
Helix 12
AB3
A
178 188Right-handed alpha
Helix 13
AB4
A
218 225Right-handed alpha
Helix 14
AB5
A
229 237Right-handed alpha
Helix 15
AB6
A
244 250Right-handed alpha
Helix 16
AB7
A
256 258Right-handed 310
Helix 17
AB8
A
259 264Right-handed alpha
Helix 18
AB9
A
266 273Right-handed alpha
Helix 19
AC1
A
280 294Right-handed alpha
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There are 2 sheets in PDB entry 9PDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
4 7parallel
Strand 3
A
45 49parallel
Strand 4
A
202 210anti-parallel
Strand 5
A
93 105anti-parallel
Strand 6
A
173 177anti-parallel
Strand 7
A
125 127parallel
Strand 8
A
154 157parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
202 210anti-parallel
Strand 3
A
93 105anti-parallel
Strand 4
A
191 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il