Analysis of interatomic Contacts of Structural Units in PDB entry:
9PEB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PEB entry

There is 1 chain in PDB entry 9PEB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 345	LYS 1528

There are 38 helices in PDB entry 9PEB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	350	355	Right-handed alpha
Helix 2	AA2	A	356	358	Right-handed 310
Helix 3	AA3	A	372	377	Right-handed alpha
Helix 4	AA4	A	407	411	Right-handed 310
Helix 5	AA5	A	498	516	Right-handed alpha
Helix 6	AA6	A	526	535	Right-handed alpha
Helix 7	AA7	A	547	558	Right-handed alpha
Helix 8	AA8	A	558	569	Right-handed alpha
Helix 9	AA9	A	573	576	Right-handed 310
Helix 10	AB1	A	577	587	Right-handed alpha
Helix 11	AB2	A	630	644	Right-handed alpha
Helix 12	AB3	A	781	783	Right-handed 310
Helix 13	AB4	A	785	789	Right-handed 310
Helix 14	AB5	A	825	846	Right-handed alpha
Helix 15	AB6	A	869	873	Right-handed 310
Helix 16	AB7	A	880	892	Right-handed alpha
Helix 17	AB8	A	976	980	Right-handed 310
Helix 18	AB9	A	981	987	Right-handed alpha
Helix 19	AC1	A	1003	1005	Right-handed 310
Helix 20	AC2	A	1103	1113	Right-handed alpha
Helix 21	AC3	A	1124	1135	Right-handed alpha
Helix 22	AC4	A	1144	1156	Right-handed alpha
Helix 23	AC5	A	1158	1162	Right-handed 310
Helix 24	AC6	A	1165	1174	Right-handed alpha
Helix 25	AC7	A	1176	1183	Right-handed alpha
Helix 26	AC8	A	1214	1218	Right-handed 310
Helix 27	AC9	A	1219	1231	Right-handed alpha
Helix 28	AD1	A	1242	1246	Right-handed 310
Helix 29	AD2	A	1249	1263	Right-handed alpha
Helix 30	AD3	A	1274	1277	Right-handed 310
Helix 31	AD4	A	1338	1343	Right-handed alpha
Helix 32	AD5	A	1365	1373	Right-handed alpha
Helix 33	AD6	A	1387	1396	Right-handed alpha
Helix 34	AD7	A	1404	1408	Right-handed 310
Helix 35	AD8	A	1434	1439	Right-handed 310
Helix 36	AD9	A	1477	1485	Right-handed alpha
Helix 37	AE1	A	1496	1507	Right-handed alpha
Helix 38	AE2	A	1509	1525	Right-handed alpha

There are 13 sheets in PDB entry 9PEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	349	first strand
Strand 2	A	592	595	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	457	first strand
Strand 2	A	424	431	anti-parallel
Strand 3	A	390	399	anti-parallel
Strand 4	A	484	487	parallel
Strand 5	A	474	480	anti-parallel
Strand 6	A	461	468	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	713	first strand
Strand 2	A	729	732	anti-parallel
Strand 3	A	735	738	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	727	first strand
Strand 2	A	756	764	anti-parallel
Strand 3	A	770	779	anti-parallel
Strand 4	A	794	804	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	727	first strand
Strand 2	A	756	764	anti-parallel
Strand 3	A	742	744	anti-parallel
Strand 4	A	810	812	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	856	859	first strand
Strand 2	A	864	867	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	896	897	first strand
Strand 2	A	903	906	anti-parallel
Strand 3	A	909	912	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	994	1002	first strand
Strand 2	A	968	975	anti-parallel
Strand 3	A	947	955	anti-parallel
Strand 4	A	916	919	anti-parallel
Strand 5	A	1007	1014	anti-parallel
Strand 6	A	1031	1033	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1115	1116	first strand
Strand 2	A	1093	1097	parallel
Strand 3	A	1191	1194	parallel
Strand 4	A	1234	1240	parallel
Strand 5	A	1283	1290	anti-parallel
Strand 6	A	1265	1272	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1119	1121	first strand
Strand 2	A	1139	1141	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1312	1314	first strand
Strand 2	A	1320	1322	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1356	1357	first strand
Strand 2	A	1378	1379	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1412	1414	first strand
Strand 2	A	1420	1422	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PEB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PEB