Analysis of interatomic Contacts of Structural Units in PDB entry:
9PES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PES entry

There are 5 chains in PDB entry 9PES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 544VAL 781
B
 LEU 5LYS 322
C
 LEU 13GLU 334
D
 LEU 22LEU 353
E
 SER 2ASP 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 9PES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
544 559Right-handed alpha
Helix 2
AA2
A
561 564Right-handed 310
Helix 3
AA3
A
565 572Right-handed alpha
Helix 4
AA4
A
573 583Right-handed alpha
Helix 5
AA5
A
587 596Right-handed alpha
Helix 6
AA6
A
609 633Right-handed alpha
Helix 7
AA7
A
637 639Right-handed 310
Helix 8
AA8
A
640 649Right-handed alpha
Helix 9
AA9
A
649 657Right-handed alpha
Helix 10
AB1
A
668 691Right-handed alpha
Helix 11
AB2
A
697 704Right-handed alpha
Helix 12
AB3
A
704 714Right-handed alpha
Helix 13
AB4
A
714 721Right-handed alpha
Helix 14
AB5
A
724 735Right-handed alpha
Helix 15
AB6
A
738 746Right-handed alpha
Helix 16
AB7
A
747 749Right-handed 310
Helix 17
AB8
A
750 754Right-handed 310
Helix 18
AB9
A
755 762Right-handed alpha
Helix 19
AC1
A
763 776Right-handed alpha
Helix 20
AC2
B
10 15Right-handed alpha
Helix 21
AC3
B
19 23Right-handed 310
Helix 22
AC4
B
26 40Right-handed alpha
Helix 23
AC5
B
54 67Right-handed alpha
Helix 24
AC6
B
85 99Right-handed alpha
Helix 25
AC7
B
115 119Right-handed 310
Helix 26
AC8
B
120 134Right-handed alpha
Helix 27
AC9
B
146 150Right-handed 310
Helix 28
AD1
B
151 158Right-handed alpha
Helix 29
AD2
B
167 182Right-handed alpha
Helix 30
AD3
B
187 198Right-handed alpha
Helix 31
AD4
B
201 217Right-handed alpha
Helix 32
AD5
B
220 228Right-handed alpha
Helix 33
AD6
B
232 242Right-handed alpha
Helix 34
AD7
B
244 256Right-handed alpha
Helix 35
AD8
B
262 276Right-handed alpha
Helix 36
AD9
B
281 301Right-handed alpha
Helix 37
AE1
B
305 322Right-handed alpha
Helix 38
AE2
C
31 44Right-handed alpha
Helix 39
AE3
C
58 72Right-handed alpha
Helix 40
AE4
C
89 103Right-handed alpha
Helix 41
AE5
C
118 122Right-handed 310
Helix 42
AE6
C
123 137Right-handed alpha
Helix 43
AE7
C
154 161Right-handed alpha
Helix 44
AE8
C
170 186Right-handed alpha
Helix 45
AE9
C
190 202Right-handed alpha
Helix 46
AF1
C
204 219Right-handed alpha
Helix 47
AF2
C
228 237Right-handed alpha
Helix 48
AF3
C
240 254Right-handed alpha
Helix 49
AF4
C
255 270Right-handed alpha
Helix 50
AF5
C
273 286Right-handed alpha
Helix 51
AF6
C
292 312Right-handed alpha
Helix 52
AF7
C
315 331Right-handed alpha
Helix 53
AF8
C
332 334Right-handed 310
Helix 54
AF9
D
26 31Right-handed alpha
Helix 55
AG1
D
35 39Right-handed 310
Helix 56
AG2
D
42 55Right-handed alpha
Helix 57
AG3
D
70 84Right-handed alpha
Helix 58
AG4
D
87 91Right-handed alpha
Helix 59
AG5
D
102 116Right-handed alpha
Helix 60
AG6
D
122 129Right-handed alpha
Helix 61
AG7
D
142 145Right-handed 310
Helix 62
AG8
D
146 160Right-handed alpha
Helix 63
AG9
D
172 176Right-handed 310
Helix 64
AH1
D
177 183Right-handed alpha
Helix 65
AH2
D
193 209Right-handed alpha
Helix 66
AH3
D
215 225Right-handed alpha
Helix 67
AH4
D
227 245Right-handed alpha
Helix 68
AH5
D
252 260Right-handed alpha
Helix 69
AH6
D
264 278Right-handed alpha
Helix 70
AH7
D
279 292Right-handed alpha
Helix 71
AH8
D
296 310Right-handed alpha
Helix 72
AH9
D
315 334Right-handed alpha
Helix 73
AI1
D
338 352Right-handed alpha
Helix 74
AI2
E
3 8Right-handed alpha
Helix 75
AI3
E
12 16Right-handed 310
Helix 76
AI4
E
19 31Right-handed alpha
Helix 77
AI5
E
48 62Right-handed alpha
Helix 78
AI6
E
63 67Right-handed 310
Helix 79
AI7
E
97 103Right-handed 310
Helix 80
AI8
E
104 120Right-handed alpha
Helix 81
AI9
E
143 146Right-handed 310
Helix 82
AJ1
E
147 161Right-handed alpha
Helix 83
AJ2
E
178 185Right-handed alpha
Helix 84
AJ3
E
194 210Right-handed alpha
Helix 85
AJ4
E
216 227Right-handed alpha
Helix 86
AJ5
E
229 244Right-handed alpha
Helix 87
AJ6
E
257 273Right-handed alpha
Helix 88
AJ7
E
275 292Right-handed alpha
Helix 89
AJ8
E
295 308Right-handed alpha
Helix 90
AJ9
E
314 335Right-handed alpha
Helix 91
AK1
E
337 354Right-handed alpha
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There are 8 sheets in PDB entry 9PES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 601first strand
Strand 2
A
658 660anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
109 114parallel
Strand 3
B
138 144parallel
Strand 4
B
45 49parallel
Strand 5
B
159 163parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
218 219parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 83first strand
Strand 2
C
112 117parallel
Strand 3
C
141 147parallel
Strand 4
C
49 52parallel
Strand 5
C
162 165parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 189first strand
Strand 2
C
226 227parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 96first strand
Strand 2
D
135 140parallel
Strand 3
D
164 170parallel
Strand 4
D
60 64parallel
Strand 5
D
184 188parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
69 76first strand
Strand 2
E
82 89anti-parallel
Strand 3
E
93 96anti-parallel
Strand 4
E
136 141parallel
Strand 5
E
165 171parallel
Strand 6
E
39 42parallel
Strand 7
E
186 189parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
212 213first strand
Strand 2
E
247 248parallel
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