Analysis of interatomic Contacts of Structural Units in PDB entry:
9PF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PF2 entry

There are 6 chains in PDB entry 9PF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 208	PRO 740
B	ASN 0	PRO 740
C	ASN 210	PRO 740
D	ILE 208	PRO 740
E	PRO 211	PRO 740
F	PHE 215	PRO 740

There are161 helices in PDB entry 9PF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	214	219	Right-handed alpha
Helix 2	AA2	A	223	234	Right-handed alpha
Helix 3	AA3	A	236	240	Right-handed 310
Helix 4	AA4	A	241	249	Right-handed alpha
Helix 5	AA5	A	265	277	Right-handed alpha
Helix 6	AA6	A	286	291	Right-handed alpha
Helix 7	AA7	A	298	303	Right-handed alpha
Helix 8	AA8	A	305	316	Right-handed alpha
Helix 9	AA9	A	329	334	Right-handed 310
Helix 10	AB1	A	348	359	Right-handed alpha
Helix 11	AB2	A	375	379	Right-handed 310
Helix 12	AB3	A	380	385	Right-handed 310
Helix 13	AB4	A	399	411	Right-handed alpha
Helix 14	AB5	A	412	418	Right-handed alpha
Helix 15	AB6	A	425	433	Right-handed alpha
Helix 16	AB7	A	437	462	Right-handed alpha
Helix 17	AB8	A	466	473	Right-handed alpha
Helix 18	AB9	A	478	487	Right-handed alpha
Helix 19	AC1	A	511	528	Right-handed alpha
Helix 20	AC2	A	548	561	Right-handed alpha
Helix 21	AC3	A	569	573	Right-handed 310
Helix 22	AC4	A	577	594	Right-handed alpha
Helix 23	AC5	A	604	609	Right-handed alpha
Helix 24	AC6	A	619	630	Right-handed alpha
Helix 25	AC7	A	648	655	Right-handed alpha
Helix 26	AC8	A	656	661	Right-handed 310
Helix 27	AC9	A	672	684	Right-handed alpha
Helix 28	AD1	A	687	698	Right-handed alpha
Helix 29	AD2	A	706	718	Right-handed alpha
Helix 30	AD3	A	725	736	Right-handed alpha
Helix 31	AD4	B	13	20	Right-handed alpha
Helix 32	AD5	B	63	71	Right-handed alpha
Helix 33	AD6	B	86	91	Right-handed alpha
Helix 34	AD7	B	103	107	Right-handed 310
Helix 35	AD8	B	114	126	Right-handed alpha
Helix 36	AD9	B	214	219	Right-handed alpha
Helix 37	AE1	B	223	235	Right-handed alpha
Helix 38	AE2	B	241	249	Right-handed alpha
Helix 39	AE3	B	265	275	Right-handed alpha
Helix 40	AE4	B	298	306	Right-handed alpha
Helix 41	AE5	B	306	317	Right-handed alpha
Helix 42	AE6	B	348	359	Right-handed alpha
Helix 43	AE7	B	399	411	Right-handed alpha
Helix 44	AE8	B	412	417	Right-handed alpha
Helix 45	AE9	B	425	433	Right-handed alpha
Helix 46	AF1	B	437	455	Right-handed alpha
Helix 47	AF2	B	466	471	Right-handed alpha
Helix 48	AF3	B	476	487	Right-handed alpha
Helix 49	AF4	B	497	501	Right-handed 310
Helix 50	AF5	B	513	526	Right-handed alpha
Helix 51	AF6	B	548	559	Right-handed alpha
Helix 52	AF7	B	577	592	Right-handed alpha
Helix 53	AF8	B	593	595	Right-handed 310
Helix 54	AF9	B	605	609	Right-handed 310
Helix 55	AG1	B	619	630	Right-handed alpha
Helix 56	AG2	B	648	655	Right-handed alpha
Helix 57	AG3	B	672	684	Right-handed alpha
Helix 58	AG4	B	687	699	Right-handed alpha
Helix 59	AG5	B	706	719	Right-handed alpha
Helix 60	AG6	B	724	737	Right-handed alpha
Helix 61	AG7	C	224	236	Right-handed alpha
Helix 62	AG8	C	237	239	Right-handed 310
Helix 63	AG9	C	241	249	Right-handed alpha
Helix 64	AH1	C	266	277	Right-handed alpha
Helix 65	AH2	C	286	291	Right-handed alpha
Helix 66	AH3	C	299	304	Right-handed alpha
Helix 67	AH4	C	306	317	Right-handed alpha
Helix 68	AH5	C	337	341	Right-handed 310
Helix 69	AH6	C	349	359	Right-handed alpha
Helix 70	AH7	C	380	384	Right-handed 310
Helix 71	AH8	C	399	411	Right-handed alpha
Helix 72	AH9	C	412	416	Right-handed 310
Helix 73	AI1	C	425	432	Right-handed alpha
Helix 74	AI2	C	437	455	Right-handed alpha
Helix 75	AI3	C	476	487	Right-handed alpha
Helix 76	AI4	C	511	528	Right-handed alpha
Helix 77	AI5	C	549	561	Right-handed alpha
Helix 78	AI6	C	569	573	Right-handed 310
Helix 79	AI7	C	577	591	Right-handed alpha
Helix 80	AI8	C	592	594	Right-handed 310
Helix 81	AI9	C	619	630	Right-handed alpha
Helix 82	AJ1	C	672	684	Right-handed alpha
Helix 83	AJ2	C	687	698	Right-handed alpha
Helix 84	AJ3	C	706	719	Right-handed alpha
Helix 85	AJ4	C	724	737	Right-handed alpha
Helix 86	AJ5	D	214	219	Right-handed 310
Helix 87	AJ6	D	224	236	Right-handed alpha
Helix 88	AJ7	D	241	249	Right-handed alpha
Helix 89	AJ8	D	265	275	Right-handed alpha
Helix 90	AJ9	D	286	291	Right-handed alpha
Helix 91	AK1	D	296	315	Right-handed alpha
Helix 92	AK2	D	347	359	Right-handed alpha
Helix 93	AK3	D	380	384	Right-handed 310
Helix 94	AK4	D	399	411	Right-handed alpha
Helix 95	AK5	D	412	417	Right-handed alpha
Helix 96	AK6	D	425	432	Right-handed alpha
Helix 97	AK7	D	437	453	Right-handed alpha
Helix 98	AK8	D	476	487	Right-handed alpha
Helix 99	AK9	D	495	500	Right-handed alpha
Helix 100	AL1	D	511	526	Right-handed alpha
Helix 101	AL2	D	552	559	Right-handed alpha
Helix 102	AL3	D	569	573	Right-handed 310
Helix 103	AL4	D	577	590	Right-handed alpha
Helix 104	AL5	D	604	608	Right-handed 310
Helix 105	AL6	D	619	631	Right-handed alpha
Helix 106	AL7	D	648	655	Right-handed alpha
Helix 107	AL8	D	656	660	Right-handed 310
Helix 108	AL9	D	672	684	Right-handed alpha
Helix 109	AM1	D	687	699	Right-handed alpha
Helix 110	AM2	D	706	718	Right-handed alpha
Helix 111	AM3	D	726	734	Right-handed alpha
Helix 112	AM4	E	224	234	Right-handed alpha
Helix 113	AM5	E	241	249	Right-handed alpha
Helix 114	AM6	E	266	277	Right-handed alpha
Helix 115	AM7	E	286	291	Right-handed alpha
Helix 116	AM8	E	296	316	Right-handed alpha
Helix 117	AM9	E	329	334	Right-handed alpha
Helix 118	AN1	E	346	359	Right-handed alpha
Helix 119	AN2	E	375	379	Right-handed 310
Helix 120	AN3	E	399	411	Right-handed alpha
Helix 121	AN4	E	412	418	Right-handed 310
Helix 122	AN5	E	425	433	Right-handed alpha
Helix 123	AN6	E	437	455	Right-handed alpha
Helix 124	AN7	E	476	487	Right-handed alpha
Helix 125	AN8	E	495	501	Right-handed 310
Helix 126	AN9	E	511	530	Right-handed alpha
Helix 127	AO1	E	549	560	Right-handed alpha
Helix 128	AO2	E	569	573	Right-handed 310
Helix 129	AO3	E	579	595	Right-handed alpha
Helix 130	AO4	E	604	610	Right-handed alpha
Helix 131	AO5	E	619	630	Right-handed alpha
Helix 132	AO6	E	648	655	Right-handed alpha
Helix 133	AO7	E	656	660	Right-handed 310
Helix 134	AO8	E	672	684	Right-handed alpha
Helix 135	AO9	E	687	699	Right-handed alpha
Helix 136	AP1	E	706	719	Right-handed alpha
Helix 137	AP2	E	724	737	Right-handed alpha
Helix 138	AP3	F	215	219	Right-handed 310
Helix 139	AP4	F	223	234	Right-handed alpha
Helix 140	AP5	F	266	277	Right-handed alpha
Helix 141	AP6	F	298	317	Right-handed alpha
Helix 142	AP7	F	330	333	Right-handed 310
Helix 143	AP8	F	347	359	Right-handed alpha
Helix 144	AP9	F	375	379	Right-handed 310
Helix 145	AQ1	F	381	385	Right-handed 310
Helix 146	AQ2	F	399	411	Right-handed alpha
Helix 147	AQ3	F	411	417	Right-handed alpha
Helix 148	AQ4	F	425	432	Right-handed alpha
Helix 149	AQ5	F	437	457	Right-handed alpha
Helix 150	AQ6	F	476	487	Right-handed alpha
Helix 151	AQ7	F	511	530	Right-handed alpha
Helix 152	AQ8	F	548	560	Right-handed alpha
Helix 153	AQ9	F	577	594	Right-handed alpha
Helix 154	AR1	F	604	609	Right-handed alpha
Helix 155	AR2	F	619	631	Right-handed alpha
Helix 156	AR3	F	648	655	Right-handed alpha
Helix 157	AR4	F	673	684	Right-handed alpha
Helix 158	AR5	F	687	699	Right-handed alpha
Helix 159	AR6	F	706	719	Right-handed alpha
Helix 160	AR7	F	720	725	Right-handed 310
Helix 161	AR8	F	726	737	Right-handed alpha

There are 18 sheets in PDB entry 9PF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	323	327	parallel
Strand 3	A	367	373	parallel
Strand 4	A	255	259	parallel
Strand 5	A	391	394	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	568	first strand
Strand 2	A	600	603	parallel
Strand 3	A	640	646	parallel
Strand 4	A	536	542	parallel
Strand 5	A	663	666	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	10	first strand
Strand 2	B	59	62	parallel
Strand 3	B	22	24	anti-parallel
Strand 4	B	43	51	parallel
Strand 5	B	34	40	anti-parallel
Strand 6	B	77	83	anti-parallel
Strand 7	B	4	10	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	143	154	anti-parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	182	187	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	194	196	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	174	177	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	325	first strand
Strand 2	B	367	373	parallel
Strand 3	B	255	259	parallel
Strand 4	B	392	394	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	567	first strand
Strand 2	B	600	602	parallel
Strand 3	B	640	646	parallel
Strand 4	B	536	542	parallel
Strand 5	B	664	666	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	323	326	parallel
Strand 3	C	367	373	parallel
Strand 4	C	256	259	parallel
Strand 5	C	391	394	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	567	first strand
Strand 2	C	597	602	parallel
Strand 3	C	639	645	parallel
Strand 4	C	536	542	parallel
Strand 5	C	664	666	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	323	328	parallel
Strand 3	D	367	373	parallel
Strand 4	D	256	259	parallel
Strand 5	D	391	394	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	568	first strand
Strand 2	D	599	602	parallel
Strand 3	D	640	646	parallel
Strand 4	D	536	542	parallel
Strand 5	D	663	666	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	285	first strand
Strand 2	E	323	328	parallel
Strand 3	E	367	373	parallel
Strand 4	E	256	259	parallel
Strand 5	E	391	394	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	566	568	first strand
Strand 2	E	600	602	parallel
Strand 3	E	642	645	parallel
Strand 4	E	538	542	parallel
Strand 5	E	664	666	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	286	first strand
Strand 2	F	323	328	parallel
Strand 3	F	367	373	parallel
Strand 4	F	255	259	parallel
Strand 5	F	391	394	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	597	602	first strand
Strand 2	F	639	646	parallel
Strand 3	F	537	542	parallel
Strand 4	F	663	666	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	611	612	first strand
Strand 2	F	617	618	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	670	672	first strand
Strand 2	F	702	705	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PF2