Analysis of interatomic Contacts of Structural Units in PDB entry:
9PF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PF3 entry

There is 1 chain in PDB entry 9PF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9PF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 35Right-handed alpha
Helix 2
AA2
A
45 51Right-handed alpha
Helix 3
AA3
A
76 101Right-handed alpha
Helix 4
AA4
A
116 127Right-handed alpha
Helix 5
AA5
A
137 144Right-handed alpha
Helix 6
AA6
A
144 152Right-handed alpha
Helix 7
AA7
A
194 201Right-handed 310
Helix 8
AA8
A
212 215Right-handed 310
Helix 9
AA9
A
216 224Right-handed alpha
Helix 10
AB1
A
237 241Right-handed 310
Helix 11
AB2
A
259 269Right-handed alpha
Helix 12
AB3
A
287 301Right-handed alpha
Helix 13
AB4
A
310 315Right-handed alpha
Helix 14
AB5
A
322 326Right-handed 310
Helix 15
AB6
A
336 342Right-handed alpha
Helix 16
AB7
A
354 364Right-handed alpha
Helix 17
AB8
A
374 376Right-handed 310
Helix 18
AB9
A
377 387Right-handed alpha
Helix 19
AC1
A
403 416Right-handed alpha
Helix 20
AC2
A
416 439Right-handed alpha
Helix 21
AC3
A
442 455Right-handed alpha
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There are 2 sheets in PDB entry 9PF3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 64first strand
Strand 2
A
37 44parallel
Strand 3
A
9 14parallel
Strand 4
A
107 113parallel
Strand 5
A
129 134parallel
Strand 6
A
206 209parallel
Strand 7
A
230 231parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
304 308parallel
Strand 3
A
275 279parallel
Strand 4
A
346 351parallel
Strand 5
A
368 370parallel
Strand 6
A
391 392parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il