Analysis of interatomic Contacts of Structural Units in PDB entry:
9PFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PFJ entry

There are 6 chains in PDB entry 9PFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 225	MET 530
H	GLN 1	SER 113
L	SER 2	LEU 107
B	LYS 225	MET 530
C	GLN 1	SER 113
D	SER 2	LEU 107

There are 6 helices in PDB entry 9PFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	233	237	Right-handed 310
Helix 2	AA2	A	454	465	Right-handed alpha
Helix 3	AA3	H	83	87	Right-handed 310
Helix 4	AA4	B	233	237	Right-handed 310
Helix 5	AA5	B	454	465	Right-handed alpha
Helix 6	AA6	C	83	87	Right-handed 310

There are 20 sheets in PDB entry 9PFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	430	437	anti-parallel
Strand 3	A	248	251	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	430	437	anti-parallel
Strand 3	A	497	499	anti-parallel
Strand 4	A	485	491	anti-parallel
Strand 5	A	472	478	anti-parallel
Strand 6	A	514	521	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	272	273	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	292	first strand
Strand 2	A	299	303	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	346	352	anti-parallel
Strand 5	A	329	337	anti-parallel
Strand 6	A	380	389	anti-parallel
Strand 7	A	287	292	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	94	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	98	first strand
Strand 2	H	100	100	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	44	48	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	20	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	23	24	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	20	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	63	67	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	450	first strand
Strand 2	B	430	437	anti-parallel
Strand 3	B	248	251	anti-parallel
Strand 4	B	506	507	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	450	first strand
Strand 2	B	430	437	anti-parallel
Strand 3	B	497	499	anti-parallel
Strand 4	B	485	491	anti-parallel
Strand 5	B	472	478	anti-parallel
Strand 6	B	514	521	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	266	first strand
Strand 2	B	272	273	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	292	first strand
Strand 2	B	299	303	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	346	352	anti-parallel
Strand 5	B	329	337	anti-parallel
Strand 6	B	380	389	anti-parallel
Strand 7	B	287	292	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	88	94	anti-parallel
Strand 5	C	107	109	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	100	100	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	102	105	parallel
Strand 3	D	85	89	anti-parallel
Strand 4	D	34	38	anti-parallel
Strand 5	D	44	48	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	23	24	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	63	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PFJ