Analysis of interatomic Contacts of Structural Units in PDB entry:
9PFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PFN entry

There are 8 chains in PDB entry 9PFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 185CYS 341
B
 GLU 3THR 34
C
 T 1 G 15
D
 A 1 C 15
E
 GLU 184CYS 341
F
 LYS 6HIS 27
G
 T 1 G 15
H
 A 1 C 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9PFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 206Right-handed alpha
Helix 2
AA2
A
208 220Right-handed alpha
Helix 3
AA3
A
225 234Right-handed alpha
Helix 4
AA4
A
238 259Right-handed alpha
Helix 5
AA5
A
289 303Right-handed alpha
Helix 6
AA6
A
307 319Right-handed alpha
Helix 7
AA7
A
321 340Right-handed alpha
Helix 8
AA8
B
16 34Right-handed alpha
Helix 9
AA9
E
187 206Right-handed alpha
Helix 10
AB1
E
208 220Right-handed alpha
Helix 11
AB2
E
225 235Right-handed alpha
Helix 12
AB3
E
238 256Right-handed alpha
Helix 13
AB4
E
289 303Right-handed alpha
Helix 14
AB5
E
307 319Right-handed alpha
Helix 15
AB6
E
321 340Right-handed alpha
Helix 16
AB7
F
16 27Right-handed alpha
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There are no sheets in PDB entry 9PFN
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il