Analysis of interatomic Contacts of Structural Units in PDB entry:
9PFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PFP entry

There are 8 chains in PDB entry 9PFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 186ASN 340
B
 ARG 11GLY 32
C
 T 1 G 15
D
 A 1 C 15
E
 SER 186ASN 340
F
 ARG 11GLY 32
G
 T 1 G 15
H
 A 1 C 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9PFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
186 205Right-handed alpha
Helix 2
AA2
A
208 221Right-handed alpha
Helix 3
AA3
A
225 235Right-handed alpha
Helix 4
AA4
A
238 257Right-handed alpha
Helix 5
AA5
A
289 303Right-handed alpha
Helix 6
AA6
A
307 319Right-handed alpha
Helix 7
AA7
A
321 339Right-handed alpha
Helix 8
AA8
B
21 32Right-handed alpha
Helix 9
AA9
E
187 205Right-handed alpha
Helix 10
AB1
E
208 221Right-handed alpha
Helix 11
AB2
E
225 235Right-handed alpha
Helix 12
AB3
E
238 257Right-handed alpha
Helix 13
AB4
E
289 303Right-handed alpha
Helix 14
AB5
E
307 318Right-handed alpha
Helix 15
AB6
E
321 340Right-handed alpha
Helix 16
AB7
F
21 30Right-handed alpha
Back to top of page
There are no sheets in PDB entry 9PFP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il