Analysis of interatomic Contacts of Structural Units in PDB entry:
9PFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PFR entry

There are 7 chains in PDB entry 9PFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10ASN 2161
B
 ASN 130MET 187
C
 ASN 128THR 183
D
 ASN 130ASN 200
E
 ASP 129PHE 241
P
 A 1 G 3
T
 U 2 U 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are106 helices in PDB entry 9PFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
55 63Right-handed alpha
Helix 4
AA4
A
64 77Right-handed alpha
Helix 5
AA5
A
83 93Right-handed alpha
Helix 6
AA6
A
98 132Right-handed alpha
Helix 7
AA7
A
187 197Right-handed alpha
Helix 8
AA8
A
201 228Right-handed alpha
Helix 9
AA9
A
265 296Right-handed alpha
Helix 10
AB1
A
306 324Right-handed alpha
Helix 11
AB2
A
327 333Right-handed alpha
Helix 12
AB3
A
334 348Right-handed alpha
Helix 13
AB4
A
351 379Right-handed alpha
Helix 14
AB5
A
389 395Right-handed alpha
Helix 15
AB6
A
396 413Right-handed alpha
Helix 16
AB7
A
415 422Right-handed alpha
Helix 17
AB8
A
423 426Right-handed 310
Helix 18
AB9
A
435 448Right-handed alpha
Helix 19
AC1
A
455 478Right-handed alpha
Helix 20
AC2
A
485 489Right-handed 310
Helix 21
AC3
A
490 499Right-handed alpha
Helix 22
AC4
A
509 517Right-handed alpha
Helix 23
AC5
A
532 537Right-handed alpha
Helix 24
AC6
A
545 552Right-handed 310
Helix 25
AC7
A
559 570Right-handed alpha
Helix 26
AC8
A
571 573Right-handed 310
Helix 27
AC9
A
581 588Right-handed alpha
Helix 28
AD1
A
596 604Right-handed alpha
Helix 29
AD2
A
633 651Right-handed alpha
Helix 30
AD3
A
652 655Right-handed 310
Helix 31
AD4
A
663 678Right-handed alpha
Helix 32
AD5
A
709 714Right-handed alpha
Helix 33
AD6
A
716 725Right-handed alpha
Helix 34
AD7
A
731 737Right-handed alpha
Helix 35
AD8
A
781 801Right-handed alpha
Helix 36
AD9
A
828 851Right-handed alpha
Helix 37
AE1
A
882 887Right-handed alpha
Helix 38
AE2
A
901 920Right-handed alpha
Helix 39
AE3
A
921 939Right-handed alpha
Helix 40
AE4
A
940 944Right-handed 310
Helix 41
AE5
A
949 966Right-handed alpha
Helix 42
AE6
A
970 981Right-handed alpha
Helix 43
AE7
A
982 986Right-handed 310
Helix 44
AE8
A
992 997Right-handed 310
Helix 45
AE9
A
1003 1021Right-handed alpha
Helix 46
AF1
A
1035 1045Right-handed alpha
Helix 47
AF2
A
1052 1060Right-handed alpha
Helix 48
AF3
A
1072 1087Right-handed alpha
Helix 49
AF4
A
1090 1099Right-handed alpha
Helix 50
AF5
A
1099 1111Right-handed alpha
Helix 51
AF6
A
1118 1129Right-handed alpha
Helix 52
AF7
A
1130 1143Right-handed alpha
Helix 53
AF8
A
1149 1153Right-handed 310
Helix 54
AF9
A
1159 1174Right-handed alpha
Helix 55
AG1
A
1175 1180Right-handed alpha
Helix 56
AG2
A
1198 1212Right-handed alpha
Helix 57
AG3
A
1223 1227Right-handed alpha
Helix 58
AG4
A
1277 1281Right-handed 310
Helix 59
AG5
A
1282 1299Right-handed alpha
Helix 60
AG6
A
1304 1317Right-handed alpha
Helix 61
AG7
A
1320 1325Right-handed alpha
Helix 62
AG8
A
1354 1359Right-handed alpha
Helix 63
AG9
A
1367 1376Right-handed alpha
Helix 64
AH1
A
1384 1404Right-handed alpha
Helix 65
AH2
A
1432 1443Right-handed alpha
Helix 66
AH3
A
1452 1460Right-handed alpha
Helix 67
AH4
A
1481 1485Right-handed 310
Helix 68
AH5
A
1487 1510Right-handed alpha
Helix 69
AH6
A
1522 1528Right-handed alpha
Helix 70
AH7
A
1530 1546Right-handed alpha
Helix 71
AH8
A
1564 1569Right-handed alpha
Helix 72
AH9
A
1571 1583Right-handed alpha
Helix 73
AI1
A
1584 1592Right-handed alpha
Helix 74
AI2
A
1595 1600Right-handed 310
Helix 75
AI3
A
1603 1617Right-handed alpha
Helix 76
AI4
A
1635 1647Right-handed alpha
Helix 77
AI5
A
1665 1671Right-handed alpha
Helix 78
AI6
A
1679 1696Right-handed alpha
Helix 79
AI7
A
1764 1770Right-handed alpha
Helix 80
AI8
A
1814 1818Right-handed 310
Helix 81
AI9
A
1833 1842Right-handed alpha
Helix 82
AJ1
A
1857 1866Right-handed alpha
Helix 83
AJ2
A
1881 1886Right-handed 310
Helix 84
AJ3
A
1887 1894Right-handed alpha
Helix 85
AJ4
A
1907 1911Right-handed 310
Helix 86
AJ5
A
1941 1958Right-handed alpha
Helix 87
AJ6
A
2019 2034Right-handed alpha
Helix 88
AJ7
A
2043 2053Right-handed alpha
Helix 89
AJ8
A
2065 2076Right-handed alpha
Helix 90
AJ9
A
2097 2116Right-handed alpha
Helix 91
AK1
A
2122 2132Right-handed alpha
Helix 92
AK2
A
2135 2143Right-handed alpha
Helix 93
AK3
A
2144 2159Right-handed alpha
Helix 94
AK4
B
131 156Right-handed alpha
Helix 95
AK5
B
157 164Right-handed alpha
Helix 96
AK6
B
166 172Right-handed alpha
Helix 97
AK7
B
174 187Right-handed alpha
Helix 98
AK8
C
129 156Right-handed alpha
Helix 99
AK9
C
161 183Right-handed alpha
Helix 100
AL1
D
131 158Right-handed alpha
Helix 101
AL2
D
172 200Right-handed alpha
Helix 102
AL3
E
130 151Right-handed alpha
Helix 103
AL4
E
174 183Right-handed alpha
Helix 104
AL5
E
190 199Right-handed alpha
Helix 105
AL6
E
203 210Right-handed alpha
Helix 106
AL7
E
217 229Right-handed alpha
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There are 13 sheets in PDB entry 9PFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
1157 1158anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
260 264parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
242 244anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
E
152 155anti-parallel
Strand 3
E
171 173anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 631first strand
Strand 2
A
614 618anti-parallel
Strand 3
A
741 744parallel
Strand 4
A
769 771anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
691 694first strand
Strand 2
A
817 821anti-parallel
Strand 3
A
803 804anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 815first strand
Strand 2
A
696 699anti-parallel
Strand 3
A
861 863anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
873 875first strand
Strand 2
A
878 880anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1228 1233first strand
Strand 2
A
1409 1414anti-parallel
Strand 3
A
1241 1245anti-parallel
Strand 4
A
1361 1364anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1271 1272first strand
Strand 2
A
1330 1331anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1625 1626first strand
Strand 2
A
1675 1676parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1776 1778first strand
Strand 2
A
1993 1995anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1900 1901first strand
Strand 2
A
1872 1876parallel
Strand 3
A
1848 1852parallel
Strand 4
A
1932 1935parallel
Strand 5
A
1969 1971parallel
Strand 6
A
2008 2011anti-parallel
Strand 7
A
1987 1991anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1974 1975first strand
Strand 2
A
2004 2005anti-parallel
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