Analysis of interatomic Contacts of Structural Units in PDB entry:
9PFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PFU entry

There are 7 chains in PDB entry 9PFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10SER 1696
B
 ASN 130MET 187
C
 ASN 128THR 183
D
 ASN 130ASN 200
E
 ASP 129PHE 241
P
 A 1 G 3
T
 U 3 U 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 9PFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
55 63Right-handed alpha
Helix 4
AA4
A
64 77Right-handed alpha
Helix 5
AA5
A
83 93Right-handed alpha
Helix 6
AA6
A
98 132Right-handed alpha
Helix 7
AA7
A
187 197Right-handed alpha
Helix 8
AA8
A
201 228Right-handed alpha
Helix 9
AA9
A
265 296Right-handed alpha
Helix 10
AB1
A
306 325Right-handed alpha
Helix 11
AB2
A
328 333Right-handed alpha
Helix 12
AB3
A
334 348Right-handed alpha
Helix 13
AB4
A
351 380Right-handed alpha
Helix 14
AB5
A
389 395Right-handed alpha
Helix 15
AB6
A
396 413Right-handed alpha
Helix 16
AB7
A
415 422Right-handed alpha
Helix 17
AB8
A
423 426Right-handed 310
Helix 18
AB9
A
435 448Right-handed alpha
Helix 19
AC1
A
455 478Right-handed alpha
Helix 20
AC2
A
490 499Right-handed alpha
Helix 21
AC3
A
509 517Right-handed alpha
Helix 22
AC4
A
532 537Right-handed alpha
Helix 23
AC5
A
545 552Right-handed 310
Helix 24
AC6
A
559 570Right-handed alpha
Helix 25
AC7
A
581 588Right-handed alpha
Helix 26
AC8
A
596 604Right-handed alpha
Helix 27
AC9
A
633 651Right-handed alpha
Helix 28
AD1
A
652 655Right-handed 310
Helix 29
AD2
A
663 679Right-handed alpha
Helix 30
AD3
A
709 714Right-handed alpha
Helix 31
AD4
A
714 725Right-handed alpha
Helix 32
AD5
A
731 737Right-handed alpha
Helix 33
AD6
A
781 801Right-handed alpha
Helix 34
AD7
A
832 851Right-handed alpha
Helix 35
AD8
A
882 887Right-handed alpha
Helix 36
AD9
A
901 920Right-handed alpha
Helix 37
AE1
A
921 939Right-handed alpha
Helix 38
AE2
A
940 944Right-handed 310
Helix 39
AE3
A
949 966Right-handed alpha
Helix 40
AE4
A
970 981Right-handed alpha
Helix 41
AE5
A
982 986Right-handed 310
Helix 42
AE6
A
993 997Right-handed 310
Helix 43
AE7
A
1003 1021Right-handed alpha
Helix 44
AE8
A
1035 1045Right-handed alpha
Helix 45
AE9
A
1052 1060Right-handed alpha
Helix 46
AF1
A
1072 1087Right-handed alpha
Helix 47
AF2
A
1090 1099Right-handed alpha
Helix 48
AF3
A
1099 1110Right-handed alpha
Helix 49
AF4
A
1118 1129Right-handed alpha
Helix 50
AF5
A
1130 1143Right-handed alpha
Helix 51
AF6
A
1149 1153Right-handed 310
Helix 52
AF7
A
1159 1174Right-handed alpha
Helix 53
AF8
A
1175 1180Right-handed alpha
Helix 54
AF9
A
1198 1212Right-handed alpha
Helix 55
AG1
A
1223 1228Right-handed alpha
Helix 56
AG2
A
1277 1281Right-handed 310
Helix 57
AG3
A
1282 1299Right-handed alpha
Helix 58
AG4
A
1304 1317Right-handed alpha
Helix 59
AG5
A
1320 1326Right-handed alpha
Helix 60
AG6
A
1354 1359Right-handed alpha
Helix 61
AG7
A
1367 1373Right-handed alpha
Helix 62
AG8
A
1384 1404Right-handed alpha
Helix 63
AG9
A
1432 1443Right-handed alpha
Helix 64
AH1
A
1452 1460Right-handed alpha
Helix 65
AH2
A
1487 1511Right-handed alpha
Helix 66
AH3
A
1522 1527Right-handed alpha
Helix 67
AH4
A
1530 1546Right-handed alpha
Helix 68
AH5
A
1565 1570Right-handed alpha
Helix 69
AH6
A
1571 1583Right-handed alpha
Helix 70
AH7
A
1584 1595Right-handed alpha
Helix 71
AH8
A
1596 1600Right-handed 310
Helix 72
AH9
A
1603 1617Right-handed alpha
Helix 73
AI1
A
1635 1648Right-handed alpha
Helix 74
AI2
A
1665 1671Right-handed alpha
Helix 75
AI3
A
1679 1696Right-handed alpha
Helix 76
AI4
B
131 156Right-handed alpha
Helix 77
AI5
B
157 164Right-handed alpha
Helix 78
AI6
B
166 172Right-handed alpha
Helix 79
AI7
B
174 187Right-handed alpha
Helix 80
AI8
C
129 156Right-handed alpha
Helix 81
AI9
C
161 183Right-handed alpha
Helix 82
AJ1
D
131 158Right-handed alpha
Helix 83
AJ2
D
172 200Right-handed alpha
Helix 84
AJ3
E
130 151Right-handed alpha
Helix 85
AJ4
E
174 183Right-handed alpha
Helix 86
AJ5
E
190 199Right-handed alpha
Helix 87
AJ6
E
203 210Right-handed alpha
Helix 88
AJ7
E
217 229Right-handed alpha
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There are 10 sheets in PDB entry 9PFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
1157 1158anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
260 264parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
242 244anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
E
152 155anti-parallel
Strand 3
E
171 173anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 631first strand
Strand 2
A
614 618anti-parallel
Strand 3
A
741 744parallel
Strand 4
A
770 771anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
803 804first strand
Strand 2
A
813 821anti-parallel
Strand 3
A
691 699anti-parallel
Strand 4
A
861 863anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
873 875first strand
Strand 2
A
878 880anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1116 1117first strand
Strand 2
A
1215 1216parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1231 1233first strand
Strand 2
A
1409 1412anti-parallel
Strand 3
A
1241 1245anti-parallel
Strand 4
A
1361 1364anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1271 1272first strand
Strand 2
A
1330 1331anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1624 1626first strand
Strand 2
A
1674 1676parallel
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