Analysis of interatomic Contacts of Structural Units in PDB entry:
9PGH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PGH entry

There are 8 chains in PDB entry 9PGH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	GLU 234
B	ILE 2	SER 244
C	GLN 3	ASN 1355
D	PRO 16	GLU 1380
E	ARG 3	THR 70
F	ASP 109	ASP 651
H	G -37	C 17
I	G -17	C 37

There are128 helices in PDB entry 9PGH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	38	51	Right-handed alpha
Helix 3	AA3	A	80	89	Right-handed alpha
Helix 4	AA4	A	211	227	Right-handed alpha
Helix 5	AA5	B	37	52	Right-handed alpha
Helix 6	AA6	B	80	91	Right-handed alpha
Helix 7	AA7	B	211	228	Right-handed alpha
Helix 8	AA8	B	229	231	Right-handed 310
Helix 9	AA9	B	233	244	Right-handed alpha
Helix 10	AB1	C	28	37	Right-handed alpha
Helix 11	AB2	C	52	61	Right-handed alpha
Helix 12	AB3	C	85	93	Right-handed alpha
Helix 13	AB4	C	212	218	Right-handed alpha
Helix 14	AB5	C	224	229	Right-handed alpha
Helix 15	AB6	C	279	287	Right-handed alpha
Helix 16	AB7	C	298	302	Right-handed 310
Helix 17	AB8	C	326	334	Right-handed alpha
Helix 18	AB9	C	355	361	Right-handed alpha
Helix 19	AC1	C	366	379	Right-handed alpha
Helix 20	AC2	C	386	398	Right-handed alpha
Helix 21	AC3	C	406	418	Right-handed alpha
Helix 22	AC4	C	429	445	Right-handed alpha
Helix 23	AC5	C	455	457	Right-handed 310
Helix 24	AC6	C	463	490	Right-handed alpha
Helix 25	AC7	C	506	516	Right-handed alpha
Helix 26	AC8	C	527	535	Right-handed alpha
Helix 27	AC9	C	548	552	Right-handed 310
Helix 28	AD1	C	618	622	Right-handed 310
Helix 29	AD2	C	663	668	Right-handed 310
Helix 30	AD3	C	669	674	Right-handed alpha
Helix 31	AD4	C	682	693	Right-handed alpha
Helix 32	AD5	C	694	696	Right-handed 310
Helix 33	AD6	C	711	719	Right-handed alpha
Helix 34	AD7	C	826	831	Right-handed alpha
Helix 35	AD8	C	902	913	Right-handed alpha
Helix 36	AD9	C	948	985	Right-handed alpha
Helix 37	AE1	C	1003	1009	Right-handed alpha
Helix 38	AE2	C	1011	1016	Right-handed alpha
Helix 39	AE3	C	1024	1055	Right-handed alpha
Helix 40	AE4	C	1117	1121	Right-handed 310
Helix 41	AE5	C	1127	1153	Right-handed alpha
Helix 42	AE6	C	1160	1170	Right-handed alpha
Helix 43	AE7	C	1179	1190	Right-handed alpha
Helix 44	AE8	C	1205	1217	Right-handed alpha
Helix 45	AE9	C	1275	1279	Right-handed 310
Helix 46	AF1	C	1285	1296	Right-handed alpha
Helix 47	AF2	C	1298	1306	Right-handed alpha
Helix 48	AF3	C	1314	1325	Right-handed alpha
Helix 49	AF4	C	1334	1346	Right-handed alpha
Helix 50	AF5	D	27	34	Right-handed alpha
Helix 51	AF6	D	59	64	Right-handed alpha
Helix 52	AF7	D	71	75	Right-handed 310
Helix 53	AF8	D	95	101	Right-handed 310
Helix 54	AF9	D	114	120	Right-handed alpha
Helix 55	AG1	D	123	130	Right-handed alpha
Helix 56	AG2	D	132	141	Right-handed alpha
Helix 57	AG3	D	162	173	Right-handed alpha
Helix 58	AG4	D	182	193	Right-handed alpha
Helix 59	AG5	D	196	208	Right-handed alpha
Helix 60	AG6	D	212	233	Right-handed alpha
Helix 61	AG7	D	235	240	Right-handed 310
Helix 62	AG8	D	248	252	Right-handed 310
Helix 63	AG9	D	265	287	Right-handed alpha
Helix 64	AH1	D	290	310	Right-handed alpha
Helix 65	AH2	D	339	344	Right-handed alpha
Helix 66	AH3	D	372	379	Right-handed alpha
Helix 67	AH4	D	379	390	Right-handed alpha
Helix 68	AH5	D	395	406	Right-handed alpha
Helix 69	AH6	D	409	418	Right-handed alpha
Helix 70	AH7	D	432	436	Right-handed 310
Helix 71	AH8	D	455	460	Right-handed alpha
Helix 72	AH9	D	475	485	Right-handed alpha
Helix 73	AI1	D	487	491	Right-handed 310
Helix 74	AI2	D	506	516	Right-handed alpha
Helix 75	AI3	D	531	542	Right-handed alpha
Helix 76	AI4	D	571	579	Right-handed alpha
Helix 77	AI5	D	588	592	Right-handed 310
Helix 78	AI6	D	597	612	Right-handed alpha
Helix 79	AI7	D	613	635	Right-handed alpha
Helix 80	AI8	D	649	666	Right-handed alpha
Helix 81	AI9	D	673	703	Right-handed alpha
Helix 82	AJ1	D	716	724	Right-handed alpha
Helix 83	AJ2	D	729	738	Right-handed alpha
Helix 84	AJ3	D	764	800	Right-handed alpha
Helix 85	AJ4	D	830	836	Right-handed alpha
Helix 86	AJ5	D	861	871	Right-handed alpha
Helix 87	AJ6	D	880	884	Right-handed 310
Helix 88	AJ7	D	892	896	Right-handed alpha
Helix 89	AJ8	D	911	921	Right-handed alpha
Helix 90	AJ9	D	1128	1138	Right-handed alpha
Helix 91	AK1	D	1212	1220	Right-handed alpha
Helix 92	AK2	D	1221	1241	Right-handed alpha
Helix 93	AK3	D	1245	1257	Right-handed alpha
Helix 94	AK4	D	1277	1291	Right-handed alpha
Helix 95	AK5	D	1304	1309	Right-handed alpha
Helix 96	AK6	D	1315	1322	Right-handed alpha
Helix 97	AK7	D	1324	1335	Right-handed alpha
Helix 98	AK8	D	1342	1350	Right-handed alpha
Helix 99	AK9	D	1356	1377	Right-handed alpha
Helix 100	AL1	E	5	13	Right-handed alpha
Helix 101	AL2	E	16	30	Right-handed alpha
Helix 102	AL3	E	44	55	Right-handed alpha
Helix 103	AL4	E	60	68	Right-handed alpha
Helix 104	AL5	F	113	126	Right-handed alpha
Helix 105	AL6	F	131	151	Right-handed alpha
Helix 106	AL7	F	157	167	Right-handed alpha
Helix 107	AL8	F	180	188	Right-handed alpha
Helix 108	AL9	F	243	259	Right-handed alpha
Helix 109	AM1	F	260	274	Right-handed alpha
Helix 110	AM2	F	278	297	Right-handed alpha
Helix 111	AM3	F	302	333	Right-handed alpha
Helix 112	AM4	F	337	347	Right-handed alpha
Helix 113	AM5	F	353	356	Right-handed 310
Helix 114	AM6	F	357	362	Right-handed alpha
Helix 115	AM7	F	368	391	Right-handed alpha
Helix 116	AM8	F	396	422	Right-handed alpha
Helix 117	AM9	F	424	431	Right-handed alpha
Helix 118	AN1	F	439	455	Right-handed alpha
Helix 119	AN2	F	456	458	Right-handed 310
Helix 120	AN3	F	465	485	Right-handed alpha
Helix 121	AN4	F	492	510	Right-handed alpha
Helix 122	AN5	F	518	526	Right-handed alpha
Helix 123	AN6	F	529	537	Right-handed alpha
Helix 124	AN7	F	569	588	Right-handed alpha
Helix 125	AN8	F	591	602	Right-handed alpha
Helix 126	AN9	F	611	620	Right-handed alpha
Helix 127	AO1	F	625	638	Right-handed alpha
Helix 128	AO2	F	646	650	Right-handed 310

There are 49 sheets in PDB entry 9PGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	200	202	anti-parallel
Strand 3	A	184	185	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	56	64	anti-parallel
Strand 4	A	170	171	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	132	135	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	174	176	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	205	206	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	197	198	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	26	31	anti-parallel
Strand 3	B	197	206	anti-parallel
Strand 4	B	179	189	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	101	106	anti-parallel
Strand 3	B	143	152	anti-parallel
Strand 4	B	55	64	anti-parallel
Strand 5	B	169	171	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	114	first strand
Strand 2	B	132	136	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	174	175	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1196	1197	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	70	79	anti-parallel
Strand 3	C	100	108	anti-parallel
Strand 4	C	127	129	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	133	134	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	148	151	anti-parallel
Strand 3	C	520	522	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	462	first strand
Strand 2	C	153	157	anti-parallel
Strand 3	C	538	539	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	164	first strand
Strand 2	C	179	183	anti-parallel
Strand 3	C	190	193	anti-parallel
Strand 4	C	201	204	anti-parallel
Strand 5	C	210	211	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	237	first strand
Strand 2	C	340	344	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	246	first strand
Strand 2	C	292	294	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	269	271	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	588	589	first strand
Strand 2	C	595	602	anti-parallel
Strand 3	C	607	614	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	588	589	first strand
Strand 2	C	595	602	anti-parallel
Strand 3	C	659	660	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	624	625	first strand
Strand 2	C	642	644	anti-parallel
Strand 3	C	649	651	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	729	734	first strand
Strand 2	C	738	743	anti-parallel
Strand 3	C	754	758	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	763	764	first strand
Strand 2	C	770	771	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	774	775	first strand
Strand 2	C	790	791	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	795	796	first strand
Strand 2	C	799	800	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1098	first strand
Strand 2	C	822	825	parallel
Strand 3	C	1114	1116	anti-parallel
Strand 4	C	804	810	parallel
Strand 5	C	1239	1246	anti-parallel
Strand 6	C	1223	1224	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	836	845	first strand
Strand 2	C	1066	1076	anti-parallel
Strand 3	C	933	941	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	855	856	first strand
Strand 2	C	892	895	anti-parallel
Strand 3	C	919	921	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	888	890	first strand
Strand 2	C	924	925	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1258	1260	first strand
Strand 2	D	352	359	anti-parallel
Strand 3	D	467	471	anti-parallel
Strand 4	D	423	426	anti-parallel
Strand 5	D	437	439	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1258	1260	first strand
Strand 2	D	352	359	anti-parallel
Strand 3	D	449	451	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1352	1353	first strand
Strand 2	D	21	22	anti-parallel
Strand 3	D	1337	1338	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	243	246	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	145	147	anti-parallel
Strand 3	D	180	181	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	256	first strand
Strand 2	D	262	264	anti-parallel
Strand 3	F	544	545	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	371	first strand
Strand 2	D	441	444	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	529	first strand
Strand 2	D	550	553	parallel
Strand 3	D	567	570	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	556	557	first strand
Strand 2	D	563	564	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	805	807	first strand
Strand 2	D	890	891	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	816	818	first strand
Strand 2	D	876	878	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	822	823	first strand
Strand 2	D	826	827	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	952	956	first strand
Strand 2	D	975	979	anti-parallel
Strand 3	D	986	988	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	959	961	first strand
Strand 2	D	967	969	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1017	1021	first strand
Strand 2	D	1111	1116	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1090	1091	first strand
Strand 2	D	1069	1073	anti-parallel
Strand 3	D	1026	1031	anti-parallel
Strand 4	D	1104	1106	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1039	1043	first strand
Strand 2	D	1050	1054	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1168	1169	first strand
Strand 2	D	1152	1154	anti-parallel
Strand 3	D	1199	1200	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1275	1276	first strand
Strand 2	D	1260	1264	anti-parallel
Strand 3	D	1297	1300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PGH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PGH