Analysis of interatomic Contacts of Structural Units in PDB entry:
9PGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PGX entry

There is 1 chain in PDB entry 9PGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 30LEU 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 9PGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 52Right-handed alpha
Helix 2
AA2
A
62 67Right-handed alpha
Helix 3
AA3
A
68 70Right-handed 310
Helix 4
AA4
A
78 83Right-handed alpha
Helix 5
AA5
A
84 86Right-handed 310
Helix 6
AA6
A
94 105Right-handed 310
Helix 7
AA7
A
128 137Right-handed alpha
Helix 8
AA8
A
150 157Right-handed alpha
Helix 9
AA9
A
171 185Right-handed alpha
Helix 10
AB1
A
194 196Right-handed 310
Helix 11
AB2
A
197 204Right-handed alpha
Helix 12
AB3
A
205 207Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 9PGX.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
55 59parallel
Strand 3
A
32 36parallel
Strand 4
A
88 91parallel
Strand 5
A
112 115parallel
Strand 6
A
141 144parallel
Strand 7
A
164 169anti-parallel
Strand 8
A
188 191parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il