Analysis of interatomic Contacts of Structural Units in PDB entry:
9PH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PH8 entry

There are 2 chains in PDB entry 9PH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 51PHE 547
B
 PRO 94GLY 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9PH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 82Right-handed alpha
Helix 2
AA2
A
88 92Right-handed 310
Helix 3
AA3
A
99 106Right-handed alpha
Helix 4
AA4
A
182 199Right-handed alpha
Helix 5
AA5
A
212 218Right-handed alpha
Helix 6
AA6
A
219 221Right-handed 310
Helix 7
AA7
A
269 271Right-handed 310
Helix 8
AA8
A
276 282Right-handed alpha
Helix 9
AA9
A
293 311Right-handed alpha
Helix 10
AB1
A
325 349Right-handed alpha
Helix 11
AB2
A
383 385Right-handed 310
Helix 12
AB3
A
393 398Right-handed alpha
Helix 13
AB4
A
438 440Right-handed 310
Helix 14
AB5
A
456 461Right-handed 310
Helix 15
AB6
A
508 528Right-handed alpha
Helix 16
AB7
A
540 545Right-handed alpha
Helix 17
AB8
B
99 106Right-handed alpha
Helix 18
AB9
B
182 199Right-handed alpha
Helix 19
AC1
B
212 218Right-handed alpha
Helix 20
AC2
B
219 221Right-handed 310
Helix 21
AC3
B
269 271Right-handed 310
Helix 22
AC4
B
277 282Right-handed alpha
Helix 23
AC5
B
294 311Right-handed alpha
Helix 24
AC6
B
325 349Right-handed alpha
Helix 25
AC7
B
383 385Right-handed 310
Helix 26
AC8
B
393 398Right-handed alpha
Helix 27
AC9
B
456 461Right-handed 310
Helix 28
AD1
B
508 528Right-handed alpha
Helix 29
AD2
B
540 545Right-handed alpha
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There are 10 sheets in PDB entry 9PH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
131 135anti-parallel
Strand 3
A
110 116anti-parallel
Strand 4
A
206 209parallel
Strand 5
A
264 267parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
259 261parallel
Strand 3
A
240 242anti-parallel
Strand 4
A
247 249anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
371 376parallel
Strand 3
A
352 356parallel
Strand 4
A
405 409parallel
Strand 5
A
420 425parallel
Strand 6
A
530 535anti-parallel
Strand 7
A
463 465anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
442 445anti-parallel
Strand 3
A
449 452anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 472first strand
Strand 2
A
497 499parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
110 114anti-parallel
Strand 3
B
206 209parallel
Strand 4
B
264 267parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
259 261parallel
Strand 3
B
240 242anti-parallel
Strand 4
B
247 249anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 389first strand
Strand 2
B
371 376parallel
Strand 3
B
352 356parallel
Strand 4
B
405 409parallel
Strand 5
B
420 425parallel
Strand 6
B
530 535anti-parallel
Strand 7
B
463 465anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 436first strand
Strand 2
B
442 445anti-parallel
Strand 3
B
449 452anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 472first strand
Strand 2
B
497 499parallel
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