Analysis of interatomic Contacts of Structural Units in PDB entry:
9PI5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PI5 entry

There are 2 chains in PDB entry 9PI5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9GLN 1134
G
 A 0 A 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 9PI5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 38Right-handed alpha
Helix 2
AA2
A
99 103Right-handed 310
Helix 3
AA3
A
111 123Right-handed alpha
Helix 4
AA4
A
131 138Right-handed 310
Helix 5
AA5
A
140 149Right-handed alpha
Helix 6
AA6
A
165 171Right-handed alpha
Helix 7
AA7
A
178 181Right-handed 310
Helix 8
AA8
A
198 203Right-handed 310
Helix 9
AA9
A
233 242Right-handed alpha
Helix 10
AB1
A
244 252Right-handed alpha
Helix 11
AB2
A
256 270Right-handed alpha
Helix 12
AB3
A
309 332Right-handed alpha
Helix 13
AB4
A
341 349Right-handed 310
Helix 14
AB5
A
353 378Right-handed alpha
Helix 15
AB6
A
412 416Right-handed 310
Helix 16
AB7
A
428 432Right-handed 310
Helix 17
AB8
A
447 455Right-handed alpha
Helix 18
AB9
A
458 470Right-handed alpha
Helix 19
AC1
A
484 491Right-handed alpha
Helix 20
AC2
A
510 518Right-handed alpha
Helix 21
AC3
A
570 573Right-handed 310
Helix 22
AC4
A
574 589Right-handed alpha
Helix 23
AC5
A
602 607Right-handed alpha
Helix 24
AC6
A
609 637Right-handed alpha
Helix 25
AC7
A
659 663Right-handed 310
Helix 26
AC8
A
666 693Right-handed alpha
Helix 27
AC9
A
702 717Right-handed alpha
Helix 28
AD1
A
791 802Right-handed alpha
Helix 29
AD2
A
809 813Right-handed 310
Helix 30
AD3
A
815 822Right-handed alpha
Helix 31
AD4
A
822 827Right-handed alpha
Helix 32
AD5
A
839 849Right-handed alpha
Helix 33
AD6
A
859 878Right-handed alpha
Helix 34
AD7
A
887 904Right-handed alpha
Helix 35
AD8
A
927 934Right-handed 310
Helix 36
AD9
A
940 951Right-handed alpha
Helix 37
AE1
A
952 955Right-handed 310
Helix 38
AE2
A
969 975Right-handed alpha
Helix 39
AE3
A
1048 1060Right-handed alpha
Helix 40
AE4
A
1063 1074Right-handed alpha
Helix 41
AE5
A
1075 1082Right-handed 310
Helix 42
AE6
A
1084 1093Right-handed alpha
Helix 43
AE7
A
1094 1112Right-handed alpha
Helix 44
AE8
A
1117 1133Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9PI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
724 733parallel
Strand 3
A
764 776anti-parallel
Strand 4
A
997 1003parallel
Strand 5
A
978 989anti-parallel
Strand 6
A
651 657first strand
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 538first strand
Strand 2
A
978 989anti-parallel
Strand 3
A
997 1003anti-parallel
Strand 4
A
764 776parallel
Strand 5
A
1022 1028first strand
Strand 6
A
913 918parallel
Strand 7
A
965 966anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
64 71parallel
Strand 3
A
83 89anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
155 161anti-parallel
Strand 4
A
19 25anti-parallel
Strand 5
A
190 197anti-parallel
Strand 6
A
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
155 161anti-parallel
Strand 4
A
19 25anti-parallel
Strand 5
A
190 197anti-parallel
Strand 6
A
182 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
420 421anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 390first strand
Strand 2
A
407 410anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 922first strand
Strand 2
A
960 962anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il