Analysis of interatomic Contacts of Structural Units in PDB entry:
9PJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PJA entry

There are 2 chains in PDB entry 9PJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 63	CYS 547
A	LEU 63	CYS 547

There are 30 helices in PDB entry 9PJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	67	84	Right-handed alpha
Helix 2	AA2	B	91	94	Right-handed 310
Helix 3	AA3	B	185	197	Right-handed alpha
Helix 4	AA4	B	251	253	Right-handed 310
Helix 5	AA5	B	269	274	Right-handed alpha
Helix 6	AA6	B	336	344	Right-handed alpha
Helix 7	AA7	B	354	368	Right-handed alpha
Helix 8	AA8	B	418	425	Right-handed alpha
Helix 9	AA9	B	438	443	Right-handed 310
Helix 10	AB1	B	446	468	Right-handed alpha
Helix 11	AB2	B	486	491	Right-handed alpha
Helix 12	AB3	B	491	506	Right-handed alpha
Helix 13	AB4	B	515	524	Right-handed alpha
Helix 14	AB5	B	531	547	Right-handed alpha
Helix 15	AB6	A	67	84	Right-handed alpha
Helix 16	AB7	A	91	94	Right-handed 310
Helix 17	AB8	A	185	197	Right-handed alpha
Helix 18	AB9	A	251	253	Right-handed 310
Helix 19	AC1	A	269	274	Right-handed alpha
Helix 20	AC2	A	336	345	Right-handed alpha
Helix 21	AC3	A	354	364	Right-handed alpha
Helix 22	AC4	A	365	367	Right-handed 310
Helix 23	AC5	A	390	393	Right-handed 310
Helix 24	AC6	A	418	425	Right-handed alpha
Helix 25	AC7	A	438	443	Right-handed 310
Helix 26	AC8	A	446	468	Right-handed alpha
Helix 27	AC9	A	486	491	Right-handed alpha
Helix 28	AD1	A	491	506	Right-handed alpha
Helix 29	AD2	A	515	524	Right-handed alpha
Helix 30	AD3	A	531	547	Right-handed alpha

There are 11 sheets in PDB entry 9PJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	106	first strand
Strand 2	B	117	126	anti-parallel
Strand 3	B	163	169	anti-parallel
Strand 4	B	155	159	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	B	292	295	parallel
Strand 3	B	174	184	anti-parallel
Strand 4	B	283	284	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	B	292	295	parallel
Strand 3	B	174	184	anti-parallel
Strand 4	B	138	145	anti-parallel
Strand 5	B	150	153	anti-parallel
Strand 6	B	318	321	anti-parallel
Strand 7	B	324	327	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	235	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	214	221	anti-parallel
Strand 4	B	203	211	anti-parallel
Strand 5	B	255	262	anti-parallel
Strand 6	B	411	412	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	385	389	anti-parallel
Strand 3	B	394	399	anti-parallel
Strand 4	B	348	353	parallel
Strand 5	B	432	437	parallel
Strand 6	B	472	476	parallel
Strand 7	B	512	514	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	106	first strand
Strand 2	A	117	126	anti-parallel
Strand 3	A	163	169	anti-parallel
Strand 4	A	155	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	174	184	anti-parallel
Strand 4	A	283	284	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	174	184	anti-parallel
Strand 4	A	292	294	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	215	221	anti-parallel
Strand 4	A	203	210	anti-parallel
Strand 5	A	255	262	anti-parallel
Strand 6	A	411	412	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	324	327	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	385	389	anti-parallel
Strand 3	A	394	399	anti-parallel
Strand 4	A	348	353	parallel
Strand 5	A	432	437	parallel
Strand 6	A	472	476	parallel
Strand 7	A	512	514	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PJA