Analysis of interatomic Contacts of Structural Units in PDB entry:
9PJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PJB entry

There are 2 chains in PDB entry 9PJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 268
B
 MET 1HIS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9PJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 47Right-handed 310
Helix 2
AA2
A
48 60Right-handed alpha
Helix 3
AA3
A
78 82Right-handed 310
Helix 4
AA4
A
83 100Right-handed alpha
Helix 5
AA5
A
115 128Right-handed alpha
Helix 6
AA6
A
144 153Right-handed alpha
Helix 7
AA7
A
153 162Right-handed alpha
Helix 8
AA8
A
175 182Right-handed alpha
Helix 9
AA9
A
186 194Right-handed 310
Helix 10
AB1
A
210 222Right-handed alpha
Helix 11
AB2
A
242 258Right-handed alpha
Helix 12
AB3
A
259 264Right-handed 310
Helix 13
AB4
B
45 47Right-handed 310
Helix 14
AB5
B
48 60Right-handed alpha
Helix 15
AB6
B
78 82Right-handed 310
Helix 16
AB7
B
83 100Right-handed alpha
Helix 17
AB8
B
115 128Right-handed alpha
Helix 18
AB9
B
144 151Right-handed alpha
Helix 19
AC1
B
153 162Right-handed alpha
Helix 20
AC2
B
175 182Right-handed alpha
Helix 21
AC3
B
186 191Right-handed alpha
Helix 22
AC4
B
192 194Right-handed 310
Helix 23
AC5
B
210 222Right-handed alpha
Helix 24
AC6
B
242 260Right-handed alpha
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There are 4 sheets in PDB entry 9PJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 9first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
63 67anti-parallel
Strand 4
A
30 36parallel
Strand 5
A
104 114parallel
Strand 6
A
134 137parallel
Strand 7
A
198 203parallel
Strand 8
A
229 233parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
172 174anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 9first strand
Strand 2
B
12 19anti-parallel
Strand 3
B
63 67anti-parallel
Strand 4
B
30 36parallel
Strand 5
B
104 114parallel
Strand 6
B
134 137parallel
Strand 7
B
198 203parallel
Strand 8
B
229 233parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 169first strand
Strand 2
B
172 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il