Analysis of interatomic Contacts of Structural Units in PDB entry:
9PKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PKQ entry

There are 2 chains in PDB entry 9PKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 108GLN 617
B
 MET 108LYS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 9PKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 127Right-handed alpha
Helix 2
AA2
A
129 144Right-handed alpha
Helix 3
AA3
A
148 166Right-handed alpha
Helix 4
AA4
A
168 183Right-handed alpha
Helix 5
AA5
A
186 200Right-handed alpha
Helix 6
AA6
A
202 217Right-handed alpha
Helix 7
AA7
A
221 247Right-handed alpha
Helix 8
AA8
A
253 263Right-handed alpha
Helix 9
AA9
A
297 307Right-handed alpha
Helix 10
AB1
A
309 311Right-handed 310
Helix 11
AB2
A
312 323Right-handed alpha
Helix 12
AB3
A
327 342Right-handed alpha
Helix 13
AB4
A
344 358Right-handed alpha
Helix 14
AB5
A
362 380Right-handed alpha
Helix 15
AB6
A
382 397Right-handed alpha
Helix 16
AB7
A
400 414Right-handed alpha
Helix 17
AB8
A
416 431Right-handed alpha
Helix 18
AB9
A
434 452Right-handed alpha
Helix 19
AC1
A
454 472Right-handed alpha
Helix 20
AC2
A
475 489Right-handed alpha
Helix 21
AC3
A
491 506Right-handed alpha
Helix 22
AC4
A
509 525Right-handed alpha
Helix 23
AC5
A
526 541Right-handed alpha
Helix 24
AC6
A
544 559Right-handed alpha
Helix 25
AC7
A
560 575Right-handed alpha
Helix 26
AC8
A
577 602Right-handed alpha
Helix 27
AC9
A
611 617Right-handed 310
Helix 28
AD1
B
109 127Right-handed alpha
Helix 29
AD2
B
129 144Right-handed alpha
Helix 30
AD3
B
148 166Right-handed alpha
Helix 31
AD4
B
168 183Right-handed alpha
Helix 32
AD5
B
186 200Right-handed alpha
Helix 33
AD6
B
202 217Right-handed alpha
Helix 34
AD7
B
221 244Right-handed alpha
Helix 35
AD8
B
245 247Right-handed 310
Helix 36
AD9
B
253 263Right-handed alpha
Helix 37
AE1
B
296 307Right-handed alpha
Helix 38
AE2
B
309 311Right-handed 310
Helix 39
AE3
B
312 323Right-handed alpha
Helix 40
AE4
B
327 343Right-handed alpha
Helix 41
AE5
B
344 358Right-handed alpha
Helix 42
AE6
B
362 380Right-handed alpha
Helix 43
AE7
B
382 397Right-handed alpha
Helix 44
AE8
B
400 414Right-handed alpha
Helix 45
AE9
B
416 431Right-handed alpha
Helix 46
AF1
B
434 452Right-handed alpha
Helix 47
AF2
B
454 472Right-handed alpha
Helix 48
AF3
B
475 489Right-handed alpha
Helix 49
AF4
B
491 506Right-handed alpha
Helix 50
AF5
B
509 525Right-handed alpha
Helix 51
AF6
B
526 541Right-handed alpha
Helix 52
AF7
B
544 559Right-handed alpha
Helix 53
AF8
B
560 575Right-handed alpha
Helix 54
AF9
B
577 602Right-handed alpha
Back to top of page
There are no sheets in PDB entry 9PKQ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il