Analysis of interatomic Contacts of Structural Units in PDB entry:
9PLA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PLA entry

There is 1 chain in PDB entry 9PLA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 422PHE 935
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9PLA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
435 443Right-handed alpha
Helix 2
AA2
A
552 560Right-handed alpha
Helix 3
AA3
A
579 586Right-handed alpha
Helix 4
AA4
A
589 608Right-handed alpha
Helix 5
AA5
A
609 614Right-handed alpha
Helix 6
AA6
A
644 649Right-handed alpha
Helix 7
AA7
A
650 656Right-handed alpha
Helix 8
AA8
A
659 671Right-handed alpha
Helix 9
AA9
A
685 695Right-handed alpha
Helix 10
AB1
A
702 707Right-handed alpha
Helix 11
AB2
A
708 717Right-handed alpha
Helix 12
AB3
A
723 727Right-handed 310
Helix 13
AB4
A
729 745Right-handed alpha
Helix 14
AB5
A
753 757Right-handed 310
Helix 15
AB6
A
760 772Right-handed alpha
Helix 16
AB7
A
777 794Right-handed alpha
Helix 17
AB8
A
797 804Right-handed alpha
Helix 18
AB9
A
825 838Right-handed alpha
Helix 19
AC1
A
847 851Right-handed 310
Helix 20
AC2
A
855 862Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9PLA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 429first strand
Strand 2
A
531 535anti-parallel
Strand 3
A
463 468anti-parallel
Strand 4
A
501 506anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
518 519parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 498first strand
Strand 2
A
476 481anti-parallel
Strand 3
A
511 516anti-parallel
Strand 4
A
453 458anti-parallel
Strand 5
A
539 540anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 545first strand
Strand 2
A
565 569parallel
Strand 3
A
573 578anti-parallel
Strand 4
A
621 626parallel
Strand 5
A
637 641parallel
Strand 6
A
631 634anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 813first strand
Strand 2
A
821 824anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 873first strand
Strand 2
A
876 880anti-parallel
Strand 3
A
909 911anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
897 902first strand
Strand 2
A
887 891anti-parallel
Strand 3
A
920 924anti-parallel
Strand 4
A
930 933anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il