Analysis of interatomic Contacts of Structural Units in PDB entry:
9PLV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PLV entry

There are 2 chains in PDB entry 9PLV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 23	GLN 531
B	VAL 23	PHE 530

There are 25 helices in PDB entry 9PLV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	35	Right-handed 310
Helix 2	AA2	A	79	83	Right-handed 310
Helix 3	AA3	A	106	116	Right-handed alpha
Helix 4	AA4	A	132	139	Right-handed alpha
Helix 5	AA5	A	156	160	Right-handed 310
Helix 6	AA6	A	282	290	Right-handed alpha
Helix 7	AA7	A	291	294	Right-handed 310
Helix 8	AA8	A	354	357	Right-handed 310
Helix 9	AA9	A	358	364	Right-handed alpha
Helix 10	AB1	A	364	369	Right-handed alpha
Helix 11	AB2	A	398	404	Right-handed alpha
Helix 12	AB3	A	405	407	Right-handed 310
Helix 13	AB4	A	413	417	Right-handed 310
Helix 14	AB5	B	28	35	Right-handed 310
Helix 15	AB6	B	79	83	Right-handed 310
Helix 16	AB7	B	106	114	Right-handed alpha
Helix 17	AB8	B	132	140	Right-handed alpha
Helix 18	AB9	B	282	290	Right-handed alpha
Helix 19	AC1	B	291	295	Right-handed alpha
Helix 20	AC2	B	350	356	Right-handed alpha
Helix 21	AC3	B	358	364	Right-handed alpha
Helix 22	AC4	B	364	369	Right-handed alpha
Helix 23	AC5	B	398	404	Right-handed alpha
Helix 24	AC6	B	405	407	Right-handed 310
Helix 25	AC7	B	414	417	Right-handed 310

There are 20 sheets in PDB entry 9PLV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	96	103	anti-parallel
Strand 3	A	85	93	anti-parallel
Strand 4	A	60	67	anti-parallel
Strand 5	A	523	527	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	77	anti-parallel
Strand 3	A	127	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	161	165	anti-parallel
Strand 3	A	171	174	anti-parallel
Strand 4	A	181	185	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	220	226	anti-parallel
Strand 3	A	235	244	anti-parallel
Strand 4	A	247	256	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	271	276	anti-parallel
Strand 3	A	304	310	anti-parallel
Strand 4	A	316	321	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	296	298	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	336	first strand
Strand 2	A	339	347	anti-parallel
Strand 3	A	376	383	anti-parallel
Strand 4	A	388	393	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	411	first strand
Strand 2	A	423	427	anti-parallel
Strand 3	A	443	447	anti-parallel
Strand 4	A	455	457	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	464	first strand
Strand 2	A	481	489	anti-parallel
Strand 3	A	468	471	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	464	first strand
Strand 2	A	481	489	anti-parallel
Strand 3	A	494	501	anti-parallel
Strand 4	A	506	512	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	45	first strand
Strand 2	B	97	103	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	60	67	anti-parallel
Strand 5	B	523	527	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	77	anti-parallel
Strand 3	B	127	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	171	174	anti-parallel
Strand 4	B	181	185	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	220	226	anti-parallel
Strand 3	B	235	244	anti-parallel
Strand 4	B	247	256	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	271	276	anti-parallel
Strand 3	B	304	310	anti-parallel
Strand 4	B	316	321	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	296	298	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	336	first strand
Strand 2	B	339	347	anti-parallel
Strand 3	B	376	383	anti-parallel
Strand 4	B	388	393	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	412	first strand
Strand 2	B	423	427	anti-parallel
Strand 3	B	443	447	anti-parallel
Strand 4	B	455	457	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	464	first strand
Strand 2	B	481	489	anti-parallel
Strand 3	B	468	471	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	464	first strand
Strand 2	B	481	489	anti-parallel
Strand 3	B	494	501	anti-parallel
Strand 4	B	506	512	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PLV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PLV