Analysis of interatomic Contacts of Structural Units in PDB entry:
9PLW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PLW entry

There are 2 chains in PDB entry 9PLW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 419VAL 954
G
 THR 2SER 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9PLW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
433 441Right-handed alpha
Helix 2
AA2
A
519 524Right-handed alpha
Helix 3
AA3
A
546 550Right-handed 310
Helix 4
AA4
A
552 560Right-handed alpha
Helix 5
AA5
A
578 586Right-handed alpha
Helix 6
AA6
A
588 607Right-handed alpha
Helix 7
AA7
A
643 648Right-handed alpha
Helix 8
AA8
A
649 654Right-handed alpha
Helix 9
AA9
A
658 669Right-handed alpha
Helix 10
AB1
A
684 694Right-handed alpha
Helix 11
AB2
A
701 706Right-handed alpha
Helix 12
AB3
A
714 723Right-handed alpha
Helix 13
AB4
A
741 757Right-handed alpha
Helix 14
AB5
A
763 767Right-handed 310
Helix 15
AB6
A
772 784Right-handed alpha
Helix 16
AB7
A
790 807Right-handed alpha
Helix 17
AB8
A
810 817Right-handed alpha
Helix 18
AB9
A
838 851Right-handed alpha
Helix 19
AC1
A
861 865Right-handed 310
Helix 20
AC2
A
869 875Right-handed 310
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There are 7 sheets in PDB entry 9PLW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
529 533anti-parallel
Strand 3
A
461 466anti-parallel
Strand 4
A
499 504anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 431first strand
Strand 2
A
516 517parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 496first strand
Strand 2
A
474 479anti-parallel
Strand 3
A
509 514anti-parallel
Strand 4
A
451 456anti-parallel
Strand 5
A
537 538anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 543first strand
Strand 2
A
564 568parallel
Strand 3
A
572 577anti-parallel
Strand 4
A
620 625parallel
Strand 5
A
636 640parallel
Strand 6
A
630 633anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 828first strand
Strand 2
A
832 837anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
886 888first strand
Strand 2
A
891 894anti-parallel
Strand 3
A
926 929anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 916first strand
Strand 2
A
902 906anti-parallel
Strand 3
A
939 943anti-parallel
Strand 4
A
949 952anti-parallel
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