Analysis of interatomic Contacts of Structural Units in PDB entry:
9PM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PM0 entry

There are 12 chains in PDB entry 9PM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 13	ALA 115
E	THR 13	ALA 115
B	THR 33	LYS 126
F	THR 33	LYS 126
C	ARG 41	ALA 136
G	ARG 41	ALA 136
D	LEU 23	GLY 103
H	LEU 23	GLY 103
I	C 8	C 157
J	G 11	G 160
M	MET 19	SER 268
N	MET 19	SER 268

There are 42 helices in PDB entry 9PM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	20	Right-handed alpha
Helix 2	AA2	A	24	36	Right-handed alpha
Helix 3	AA3	A	44	71	Right-handed alpha
Helix 4	AA4	A	77	87	Right-handed alpha
Helix 5	AA5	A	90	95	Right-handed alpha
Helix 6	AA6	A	110	115	Right-handed alpha
Helix 7	AA7	E	25	36	Right-handed alpha
Helix 8	AA8	E	45	71	Right-handed alpha
Helix 9	AA9	E	77	87	Right-handed alpha
Helix 10	AB1	E	90	95	Right-handed alpha
Helix 11	AB2	E	110	115	Right-handed alpha
Helix 12	AB3	B	39	50	Right-handed alpha
Helix 13	AB4	B	57	85	Right-handed alpha
Helix 14	AB5	B	91	101	Right-handed alpha
Helix 15	AB6	B	109	125	Right-handed alpha
Helix 16	AB7	F	39	48	Right-handed alpha
Helix 17	AB8	F	59	85	Right-handed alpha
Helix 18	AB9	F	91	101	Right-handed alpha
Helix 19	AC1	F	109	114	Right-handed alpha
Helix 20	AC2	F	115	125	Right-handed alpha
Helix 21	AC3	C	46	51	Right-handed alpha
Helix 22	AC4	C	51	58	Right-handed alpha
Helix 23	AC5	C	64	80	Right-handed alpha
Helix 24	AC6	C	86	114	Right-handed alpha
Helix 25	AC7	C	121	123	Right-handed 310
Helix 26	AC8	C	124	133	Right-handed alpha
Helix 27	AC9	G	46	51	Right-handed alpha
Helix 28	AD1	G	51	58	Right-handed alpha
Helix 29	AD2	G	64	80	Right-handed alpha
Helix 30	AD3	G	86	114	Right-handed alpha
Helix 31	AD4	G	121	123	Right-handed 310
Helix 32	AD5	G	124	133	Right-handed alpha
Helix 33	AD6	D	32	43	Right-handed alpha
Helix 34	AD7	D	51	63	Right-handed alpha
Helix 35	AD8	D	66	76	Right-handed alpha
Helix 36	AD9	D	84	91	Right-handed alpha
Helix 37	AE1	H	32	43	Right-handed alpha
Helix 38	AE2	H	51	63	Right-handed alpha
Helix 39	AE3	H	66	77	Right-handed alpha
Helix 40	AE4	H	84	95	Right-handed alpha
Helix 41	AE5	M	236	240	Right-handed 310
Helix 42	AE6	N	236	240	Right-handed 310

There are 15 sheets in PDB entry 9PM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	B	89	90	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	F	89	90	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	D	81	82	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	85	first strand
Strand 2	H	81	82	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	24	25	first strand
Strand 2	M	38	43	anti-parallel
Strand 3	M	91	94	anti-parallel
Strand 4	M	81	84	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	64	68	first strand
Strand 2	M	52	57	anti-parallel
Strand 3	M	104	109	anti-parallel
Strand 4	M	121	122	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	152	155	first strand
Strand 2	M	171	174	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	159	161	first strand
Strand 2	M	263	267	parallel
Strand 3	M	242	248	anti-parallel
Strand 4	M	182	188	anti-parallel
Strand 5	M	194	201	anti-parallel
Strand 6	M	206	209	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	167	168	first strand
Strand 2	M	229	232	anti-parallel
Strand 3	M	217	220	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	24	25	first strand
Strand 2	N	38	43	anti-parallel
Strand 3	N	91	94	anti-parallel
Strand 4	N	81	84	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	64	68	first strand
Strand 2	N	52	57	anti-parallel
Strand 3	N	104	109	anti-parallel
Strand 4	N	121	122	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	152	155	first strand
Strand 2	N	171	174	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	159	161	first strand
Strand 2	N	263	267	parallel
Strand 3	N	242	248	anti-parallel
Strand 4	N	182	188	anti-parallel
Strand 5	N	194	196	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	167	168	first strand
Strand 2	N	229	232	anti-parallel
Strand 3	N	217	220	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	198	200	first strand
Strand 2	N	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PM0