Analysis of interatomic Contacts of Structural Units in PDB entry:
9PM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PM1 entry

There are 2 chains in PDB entry 9PM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 261
B
 ALA 1PHE 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9PM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 17Right-handed alpha
Helix 2
AA2
A
30 34Right-handed 310
Helix 3
AA3
A
63 68Right-handed 310
Helix 4
AA4
A
69 76Right-handed alpha
Helix 5
AA5
A
92 110Right-handed alpha
Helix 6
AA6
A
112 117Right-handed alpha
Helix 7
AA7
A
130 143Right-handed alpha
Helix 8
AA8
A
184 192Right-handed alpha
Helix 9
AA9
A
209 213Right-handed 310
Helix 10
AB1
A
215 231Right-handed alpha
Helix 11
AB2
A
233 235Right-handed 310
Helix 12
AB3
A
236 241Right-handed alpha
Helix 13
AB4
A
247 250Right-handed 310
Helix 14
AB5
B
11 17Right-handed alpha
Helix 15
AB6
B
30 34Right-handed 310
Helix 16
AB7
B
63 68Right-handed 310
Helix 17
AB8
B
69 76Right-handed alpha
Helix 18
AB9
B
92 110Right-handed alpha
Helix 19
AC1
B
112 117Right-handed alpha
Helix 20
AC2
B
130 143Right-handed alpha
Helix 21
AC3
B
184 192Right-handed alpha
Helix 22
AC4
B
209 213Right-handed 310
Helix 23
AC5
B
215 231Right-handed alpha
Helix 24
AC6
B
233 235Right-handed 310
Helix 25
AC7
B
236 241Right-handed alpha
Helix 26
AC8
B
247 250Right-handed 310
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There are 4 sheets in PDB entry 9PM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
51 57parallel
Strand 5
A
119 129parallel
Strand 6
A
148 152parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
198 203parallel
Strand 3
A
252 257anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 29first strand
Strand 2
B
40 45anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
51 57parallel
Strand 5
B
119 129parallel
Strand 6
B
148 152parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 173first strand
Strand 2
B
198 203parallel
Strand 3
B
252 257anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il