Analysis of interatomic Contacts of Structural Units in PDB entry:
9PM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PM4 entry

There is 1 chain in PDB entry 9PM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5PHE 518
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9PM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 26Right-handed alpha
Helix 2
AA2
A
133 135Right-handed 310
Helix 3
AA3
A
136 142Right-handed alpha
Helix 4
AA4
A
162 169Right-handed alpha
Helix 5
AA5
A
172 191Right-handed alpha
Helix 6
AA6
A
192 197Right-handed alpha
Helix 7
AA7
A
227 232Right-handed alpha
Helix 8
AA8
A
233 239Right-handed alpha
Helix 9
AA9
A
242 254Right-handed alpha
Helix 10
AB1
A
268 278Right-handed alpha
Helix 11
AB2
A
285 290Right-handed alpha
Helix 12
AB3
A
291 300Right-handed alpha
Helix 13
AB4
A
306 310Right-handed 310
Helix 14
AB5
A
312 328Right-handed alpha
Helix 15
AB6
A
336 340Right-handed 310
Helix 16
AB7
A
343 355Right-handed alpha
Helix 17
AB8
A
360 377Right-handed alpha
Helix 18
AB9
A
380 387Right-handed alpha
Helix 19
AC1
A
408 421Right-handed alpha
Helix 20
AC2
A
430 434Right-handed 310
Helix 21
AC3
A
438 445Right-handed alpha
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There are 7 sheets in PDB entry 9PM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
46 51anti-parallel
Strand 4
A
84 89anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
101 102parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
35 41anti-parallel
Strand 5
A
122 123anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
148 152parallel
Strand 3
A
156 161anti-parallel
Strand 4
A
204 209parallel
Strand 5
A
220 224parallel
Strand 6
A
214 217anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 398first strand
Strand 2
A
402 407anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 456first strand
Strand 2
A
459 463anti-parallel
Strand 3
A
492 494anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 485first strand
Strand 2
A
470 474anti-parallel
Strand 3
A
503 507anti-parallel
Strand 4
A
513 516anti-parallel
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