Analysis of interatomic Contacts of Structural Units in PDB entry:
9PM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PM9 entry

There is 1 chain in PDB entry 9PM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 1PHE 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 9PM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
12 20Right-handed alpha
Helix 2
AA2
C
22 28Right-handed alpha
Helix 3
AA3
C
49 51Right-handed 310
Helix 4
AA4
C
74 89Right-handed alpha
Helix 5
AA5
C
105 121Right-handed alpha
Helix 6
AA6
C
134 156Right-handed alpha
Helix 7
AA7
C
167 171Right-handed 310
Helix 8
AA8
C
172 191Right-handed alpha
Helix 9
AA9
C
199 208Right-handed alpha
Helix 10
AB1
C
209 212Right-handed 310
Helix 11
AB2
C
228 232Right-handed 310
Helix 12
AB3
C
282 303Right-handed alpha
Helix 13
AB4
C
311 318Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9PM9.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
32 37parallel
Strand 3
C
6 11parallel
Strand 4
C
94 100parallel
Strand 5
C
123 130parallel
Strand 6
C
160 165parallel
Strand 7
C
220 226parallel
Strand 8
C
274 279anti-parallel
Strand 9
C
239 244anti-parallel
Strand 10
C
258 263parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il