Analysis of interatomic Contacts of Structural Units in PDB entry:
9PMB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PMB entry

There are 4 chains in PDB entry 9PMB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLN 21	ARG 573
D	GLN 21	ARG 573
A	MET 1	LYS 1198
B	MET 1	LYS 1198

There are150 helices in PDB entry 9PMB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	21	47	Right-handed alpha
Helix 2	AA2	C	48	63	Right-handed alpha
Helix 3	AA3	C	64	77	Right-handed alpha
Helix 4	AA4	C	78	111	Right-handed alpha
Helix 5	AA5	C	116	128	Right-handed alpha
Helix 6	AA6	C	131	147	Right-handed alpha
Helix 7	AA7	C	148	154	Right-handed 310
Helix 8	AA8	C	163	168	Right-handed alpha
Helix 9	AA9	C	169	180	Right-handed alpha
Helix 10	AB1	C	184	199	Right-handed alpha
Helix 11	AB2	C	200	206	Right-handed alpha
Helix 12	AB3	C	209	213	Right-handed 310
Helix 13	AB4	C	217	227	Right-handed alpha
Helix 14	AB5	C	228	247	Right-handed alpha
Helix 15	AB6	C	251	269	Right-handed alpha
Helix 16	AB7	C	270	290	Right-handed alpha
Helix 17	AB8	C	293	310	Right-handed alpha
Helix 18	AB9	C	312	332	Right-handed alpha
Helix 19	AC1	C	336	353	Right-handed alpha
Helix 20	AC2	C	354	373	Right-handed alpha
Helix 21	AC3	C	377	388	Right-handed alpha
Helix 22	AC4	C	388	395	Right-handed alpha
Helix 23	AC5	C	396	416	Right-handed alpha
Helix 24	AC6	C	424	441	Right-handed alpha
Helix 25	AC7	C	443	448	Right-handed alpha
Helix 26	AC8	C	449	451	Right-handed 310
Helix 27	AC9	C	452	459	Right-handed 310
Helix 28	AD1	C	460	471	Right-handed alpha
Helix 29	AD2	C	479	509	Right-handed alpha
Helix 30	AD3	C	514	528	Right-handed alpha
Helix 31	AD4	C	530	535	Right-handed 310
Helix 32	AD5	C	551	561	Right-handed alpha
Helix 33	AD6	C	562	570	Right-handed 310
Helix 34	AD7	D	23	53	Right-handed alpha
Helix 35	AD8	D	61	66	Right-handed alpha
Helix 36	AD9	D	67	69	Right-handed 310
Helix 37	AE1	D	71	82	Right-handed alpha
Helix 38	AE2	D	84	139	Right-handed alpha
Helix 39	AE3	D	139	154	Right-handed alpha
Helix 40	AE4	D	158	162	Right-handed 310
Helix 41	AE5	D	163	174	Right-handed alpha
Helix 42	AE6	D	180	186	Right-handed alpha
Helix 43	AE7	D	187	200	Right-handed alpha
Helix 44	AE8	D	210	227	Right-handed alpha
Helix 45	AE9	D	228	247	Right-handed alpha
Helix 46	AF1	D	253	269	Right-handed alpha
Helix 47	AF2	D	270	289	Right-handed alpha
Helix 48	AF3	D	293	310	Right-handed alpha
Helix 49	AF4	D	312	315	Right-handed 310
Helix 50	AF5	D	316	331	Right-handed alpha
Helix 51	AF6	D	335	353	Right-handed alpha
Helix 52	AF7	D	355	372	Right-handed alpha
Helix 53	AF8	D	377	395	Right-handed alpha
Helix 54	AF9	D	397	416	Right-handed alpha
Helix 55	AG1	D	425	438	Right-handed alpha
Helix 56	AG2	D	442	449	Right-handed alpha
Helix 57	AG3	D	460	468	Right-handed alpha
Helix 58	AG4	D	483	504	Right-handed alpha
Helix 59	AG5	D	505	510	Right-handed 310
Helix 60	AG6	D	512	520	Right-handed alpha
Helix 61	AG7	D	526	530	Right-handed 310
Helix 62	AG8	D	548	560	Right-handed alpha
Helix 63	AG9	D	562	573	Right-handed alpha
Helix 64	AH1	A	19	25	Right-handed alpha
Helix 65	AH2	A	57	75	Right-handed alpha
Helix 66	AH3	A	90	96	Right-handed alpha
Helix 67	AH4	A	106	121	Right-handed alpha
Helix 68	AH5	A	175	190	Right-handed alpha
Helix 69	AH6	A	237	242	Right-handed alpha
Helix 70	AH7	A	245	270	Right-handed alpha
Helix 71	AH8	A	276	279	Right-handed 310
Helix 72	AH9	A	280	287	Right-handed alpha
Helix 73	AI1	A	309	324	Right-handed alpha
Helix 74	AI2	A	336	370	Right-handed alpha
Helix 75	AI3	A	382	390	Right-handed alpha
Helix 76	AI4	A	392	396	Right-handed 310
Helix 77	AI5	A	417	424	Right-handed alpha
Helix 78	AI6	A	424	444	Right-handed alpha
Helix 79	AI7	A	445	453	Right-handed alpha
Helix 80	AI8	A	456	468	Right-handed alpha
Helix 81	AI9	A	469	472	Right-handed 310
Helix 82	AJ1	A	473	488	Right-handed alpha
Helix 83	AJ2	A	491	499	Right-handed alpha
Helix 84	AJ3	A	502	528	Right-handed alpha
Helix 85	AJ4	A	528	555	Right-handed alpha
Helix 86	AJ5	A	555	569	Right-handed alpha
Helix 87	AJ6	A	577	620	Right-handed alpha
Helix 88	AJ7	A	625	635	Right-handed alpha
Helix 89	AJ8	A	637	643	Right-handed alpha
Helix 90	AJ9	A	645	651	Right-handed alpha
Helix 91	AK1	A	654	666	Right-handed alpha
Helix 92	AK2	A	668	694	Right-handed alpha
Helix 93	AK3	A	694	701	Right-handed alpha
Helix 94	AK4	A	702	707	Right-handed 310
Helix 95	AK5	A	709	761	Right-handed alpha
Helix 96	AK6	A	761	770	Right-handed alpha
Helix 97	AK7	A	770	779	Right-handed alpha
Helix 98	AK8	A	781	803	Right-handed alpha
Helix 99	AK9	A	803	830	Right-handed alpha
Helix 100	AL1	A	830	838	Right-handed alpha
Helix 101	AL2	A	840	865	Right-handed alpha
Helix 102	AL3	A	867	914	Right-handed alpha
Helix 103	AL4	A	918	922	Right-handed 310
Helix 104	AL5	A	923	929	Right-handed alpha
Helix 105	AL6	A	931	936	Right-handed alpha
Helix 106	AL7	A	938	947	Right-handed alpha
Helix 107	AL8	A	950	963	Right-handed alpha
Helix 108	AL9	A	971	977	Right-handed alpha
Helix 109	AM1	A	1020	1025	Right-handed alpha
Helix 110	AM2	A	1027	1036	Right-handed alpha
Helix 111	AM3	A	1036	1041	Right-handed alpha
Helix 112	AM4	A	1047	1052	Right-handed alpha
Helix 113	AM5	A	1080	1084	Right-handed 310
Helix 114	AM6	A	1100	1105	Right-handed alpha
Helix 115	AM7	A	1183	1197	Right-handed alpha
Helix 116	AM8	B	19	26	Right-handed alpha
Helix 117	AM9	B	57	65	Right-handed alpha
Helix 118	AN1	B	65	75	Right-handed alpha
Helix 119	AN2	B	90	96	Right-handed alpha
Helix 120	AN3	B	106	120	Right-handed alpha
Helix 121	AN4	B	175	190	Right-handed alpha
Helix 122	AN5	B	237	242	Right-handed alpha
Helix 123	AN6	B	245	271	Right-handed alpha
Helix 124	AN7	B	280	286	Right-handed alpha
Helix 125	AN8	B	309	325	Right-handed alpha
Helix 126	AN9	B	347	353	Right-handed 310
Helix 127	AO1	B	357	370	Right-handed alpha
Helix 128	AO2	B	376	386	Right-handed alpha
Helix 129	AO3	B	388	396	Right-handed alpha
Helix 130	AO4	B	398	402	Right-handed 310
Helix 131	AO5	B	417	468	Right-handed alpha
Helix 132	AO6	B	469	522	Right-handed alpha
Helix 133	AO7	B	522	564	Right-handed alpha
Helix 134	AO8	B	565	570	Right-handed alpha
Helix 135	AO9	B	571	585	Right-handed 310
Helix 136	AP1	B	586	638	Right-handed alpha
Helix 137	AP2	B	639	650	Right-handed alpha
Helix 138	AP3	B	650	666	Right-handed alpha
Helix 139	AP4	B	669	684	Right-handed alpha
Helix 140	AP5	B	685	762	Right-handed alpha
Helix 141	AP6	B	763	794	Right-handed alpha
Helix 142	AP7	B	797	925	Right-handed alpha
Helix 143	AP8	B	929	933	Right-handed 310
Helix 144	AP9	B	934	943	Right-handed alpha
Helix 145	AQ1	B	945	965	Right-handed alpha
Helix 146	AQ2	B	968	975	Right-handed alpha
Helix 147	AQ3	B	1020	1033	Right-handed alpha
Helix 148	AQ4	B	1041	1045	Right-handed 310
Helix 149	AQ5	B	1100	1104	Right-handed 310
Helix 150	AQ6	B	1192	1198	Right-handed alpha

There are 16 sheets in PDB entry 9PMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	326	329	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	10	15	parallel
Strand 3	A	295	302	parallel
Strand 4	A	78	81	parallel
Strand 5	A	222	231	parallel
Strand 6	A	205	215	anti-parallel
Strand 7	A	129	138	anti-parallel
Strand 8	A	141	143	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	10	15	parallel
Strand 3	A	295	302	parallel
Strand 4	A	78	81	parallel
Strand 5	A	222	231	parallel
Strand 6	A	205	215	anti-parallel
Strand 7	A	129	138	anti-parallel
Strand 8	A	171	172	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	38	41	anti-parallel
Strand 3	A	44	47	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	163	164	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	201	202	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1114	1120	first strand
Strand 2	A	1123	1129	anti-parallel
Strand 3	A	1142	1150	anti-parallel
Strand 4	A	1058	1066	anti-parallel
Strand 5	A	1071	1078	anti-parallel
Strand 6	A	1087	1094	anti-parallel
Strand 7	A	983	989	parallel
Strand 8	A	992	999	anti-parallel
Strand 9	A	1011	1014	anti-parallel
Strand 10	A	1177	1180	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1109	1110	first strand
Strand 2	A	1132	1133	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	326	329	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	10	15	parallel
Strand 3	B	296	302	parallel
Strand 4	B	79	83	parallel
Strand 5	B	225	231	parallel
Strand 6	B	205	216	anti-parallel
Strand 7	B	126	137	anti-parallel
Strand 8	B	142	143	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	10	15	parallel
Strand 3	B	296	302	parallel
Strand 4	B	79	83	parallel
Strand 5	B	225	231	parallel
Strand 6	B	205	216	anti-parallel
Strand 7	B	126	137	anti-parallel
Strand 8	B	170	172	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	38	40	anti-parallel
Strand 3	B	45	47	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	163	166	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	335	337	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1107	1108	first strand
Strand 2	B	1123	1134	anti-parallel
Strand 3	B	1115	1120	anti-parallel

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There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1107	1108	first strand
Strand 2	B	1123	1134	anti-parallel
Strand 3	B	1139	1150	anti-parallel
Strand 4	B	1058	1066	anti-parallel
Strand 5	B	1071	1076	anti-parallel
Strand 6	B	1086	1094	anti-parallel
Strand 7	B	982	989	parallel
Strand 8	B	992	1003	anti-parallel
Strand 9	B	1008	1014	anti-parallel
Strand 10	B	1178	1183	anti-parallel
Strand 11	B	1165	1171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PMB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PMB