Analysis of interatomic Contacts of Structural Units in PDB entry:
9PMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PMD entry

There is 1 chain in PDB entry 9PMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9PMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
9 12Right-handed 310
Helix 3
AA3
A
15 28Right-handed alpha
Helix 4
AA4
A
29 37Right-handed alpha
Helix 5
AA5
A
38 43Right-handed alpha
Helix 6
AA6
A
59 64Right-handed alpha
Helix 7
AA7
A
85 95Right-handed alpha
Helix 8
AA8
A
127 133Right-handed alpha
Helix 9
AA9
A
135 139Right-handed 310
Helix 10
AB1
A
140 168Right-handed alpha
Helix 11
AB2
A
168 187Right-handed alpha
Helix 12
AB3
A
188 190Right-handed 310
Helix 13
AB4
A
192 222Right-handed alpha
Helix 14
AB5
A
225 233Right-handed alpha
Helix 15
AB6
A
233 253Right-handed alpha
Helix 16
AB7
A
255 270Right-handed alpha
Helix 17
AB8
A
271 276Right-handed 310
Helix 18
AB9
A
280 287Right-handed alpha
Helix 19
AC1
A
289 305Right-handed alpha
Helix 20
AC2
A
316 320Right-handed 310
Helix 21
AC3
A
330 335Right-handed 310
Helix 22
AC4
A
337 364Right-handed alpha
Helix 23
AC5
A
365 368Right-handed 310
Helix 24
AC6
A
371 382Right-handed alpha
Helix 25
AC7
A
382 397Right-handed alpha
Helix 26
AC8
A
398 416Right-handed alpha
Helix 27
AC9
A
417 420Right-handed 310
Helix 28
AD1
A
421 424Right-handed 310
Helix 29
AD2
A
425 454Right-handed alpha
Helix 30
AD3
A
455 457Right-handed 310
Helix 31
AD4
A
458 483Right-handed alpha
Helix 32
AD5
A
484 486Right-handed 310
Helix 33
AD6
A
489 507Right-handed alpha
Helix 34
AD7
A
520 524Right-handed 310
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There are 2 sheets in PDB entry 9PMD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
75 78anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
110 111anti-parallel
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