Analysis of interatomic Contacts of Structural Units in PDB entry:
9PMN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PMN entry

There are 4 chains in PDB entry 9PMN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ARG 341
B	THR 2	ARG 341
C	ASN 3	ARG 341
D	ASN 3	GLN 285

There are 61 helices in PDB entry 9PMN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	26	39	Right-handed alpha
Helix 3	AA3	A	53	64	Right-handed alpha
Helix 4	AA4	A	65	70	Right-handed alpha
Helix 5	AA5	A	81	90	Right-handed alpha
Helix 6	AA6	A	103	110	Right-handed alpha
Helix 7	AA7	A	110	119	Right-handed alpha
Helix 8	AA8	A	119	133	Right-handed alpha
Helix 9	AA9	A	144	147	Right-handed 310
Helix 10	AB1	A	164	185	Right-handed alpha
Helix 11	AB2	A	209	221	Right-handed alpha
Helix 12	AB3	A	239	251	Right-handed alpha
Helix 13	AB4	A	271	284	Right-handed alpha
Helix 14	AB5	A	310	318	Right-handed alpha
Helix 15	AB6	A	324	340	Right-handed alpha
Helix 16	AB7	B	3	15	Right-handed alpha
Helix 17	AB8	B	26	39	Right-handed alpha
Helix 18	AB9	B	53	64	Right-handed alpha
Helix 19	AC1	B	65	71	Right-handed alpha
Helix 20	AC2	B	81	90	Right-handed alpha
Helix 21	AC3	B	103	110	Right-handed alpha
Helix 22	AC4	B	110	119	Right-handed alpha
Helix 23	AC5	B	119	133	Right-handed alpha
Helix 24	AC6	B	144	147	Right-handed 310
Helix 25	AC7	B	164	185	Right-handed alpha
Helix 26	AC8	B	209	221	Right-handed alpha
Helix 27	AC9	B	239	251	Right-handed alpha
Helix 28	AD1	B	271	284	Right-handed alpha
Helix 29	AD2	B	310	318	Right-handed alpha
Helix 30	AD3	B	324	341	Right-handed alpha
Helix 31	AD4	C	4	15	Right-handed alpha
Helix 32	AD5	C	26	39	Right-handed alpha
Helix 33	AD6	C	53	64	Right-handed alpha
Helix 34	AD7	C	65	70	Right-handed alpha
Helix 35	AD8	C	81	90	Right-handed alpha
Helix 36	AD9	C	103	110	Right-handed alpha
Helix 37	AE1	C	110	119	Right-handed alpha
Helix 38	AE2	C	119	133	Right-handed alpha
Helix 39	AE3	C	144	147	Right-handed 310
Helix 40	AE4	C	164	185	Right-handed alpha
Helix 41	AE5	C	209	221	Right-handed alpha
Helix 42	AE6	C	239	251	Right-handed alpha
Helix 43	AE7	C	253	257	Right-handed 310
Helix 44	AE8	C	271	285	Right-handed alpha
Helix 45	AE9	C	310	318	Right-handed alpha
Helix 46	AF1	C	324	341	Right-handed alpha
Helix 47	AF2	D	4	15	Right-handed alpha
Helix 48	AF3	D	26	39	Right-handed alpha
Helix 49	AF4	D	53	64	Right-handed alpha
Helix 50	AF5	D	65	70	Right-handed alpha
Helix 51	AF6	D	81	89	Right-handed alpha
Helix 52	AF7	D	103	110	Right-handed alpha
Helix 53	AF8	D	110	119	Right-handed alpha
Helix 54	AF9	D	119	133	Right-handed alpha
Helix 55	AG1	D	144	147	Right-handed 310
Helix 56	AG2	D	164	185	Right-handed alpha
Helix 57	AG3	D	209	221	Right-handed alpha
Helix 58	AG4	D	239	251	Right-handed alpha
Helix 59	AG5	D	271	284	Right-handed alpha
Helix 60	AG6	D	310	318	Right-handed alpha
Helix 61	AG7	D	324	341	Right-handed alpha

There are 16 sheets in PDB entry 9PMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	42	47	parallel
Strand 3	A	18	22	parallel
Strand 4	A	94	97	parallel
Strand 5	A	136	142	parallel
Strand 6	A	189	193	parallel
Strand 7	A	259	263	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	237	238	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	227	first strand
Strand 2	A	294	296	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	269	270	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	76	first strand
Strand 2	B	42	47	parallel
Strand 3	B	18	22	parallel
Strand 4	B	94	97	parallel
Strand 5	B	136	142	parallel
Strand 6	B	189	193	parallel
Strand 7	B	259	263	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	237	238	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	227	first strand
Strand 2	B	294	296	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	269	270	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	76	first strand
Strand 2	C	42	47	parallel
Strand 3	C	18	22	parallel
Strand 4	C	94	97	parallel
Strand 5	C	136	142	parallel
Strand 6	C	189	193	parallel
Strand 7	C	259	263	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	237	238	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	227	first strand
Strand 2	C	294	296	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	269	270	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	76	first strand
Strand 2	D	42	47	parallel
Strand 3	D	18	22	parallel
Strand 4	D	94	97	parallel
Strand 5	D	136	142	parallel
Strand 6	D	189	193	parallel
Strand 7	D	259	263	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	197	first strand
Strand 2	D	237	238	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	227	first strand
Strand 2	D	294	296	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	234	first strand
Strand 2	D	269	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PMN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PMN