Analysis of interatomic Contacts of Structural Units in PDB entry:
9PMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PMW entry

There are 5 chains in PDB entry 9PMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
TYR 2CYS 18
D
ASP 3CYS 18
E
TYR 2CYS 17
A
THR 97ASN 3137
B
GLY 83VAL 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are162 helices in PDB entry 9PMW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
D
3 8Right-handed alpha
Helix 2
AA2
A
98 115Right-handed alpha
Helix 3
AA3
A
120 138Right-handed alpha
Helix 4
AA4
A
142 161Right-handed alpha
Helix 5
AA5
A
164 179Right-handed alpha
Helix 6
AA6
A
181 196Right-handed alpha
Helix 7
AA7
A
197 199Right-handed 310
Helix 8
AA8
A
200 219Right-handed alpha
Helix 9
AA9
A
223 242Right-handed alpha
Helix 10
AB1
A
243 245Right-handed 310
Helix 11
AB2
A
246 259Right-handed alpha
Helix 12
AB3
A
265 283Right-handed alpha
Helix 13
AB4
A
285 300Right-handed alpha
Helix 14
AB5
A
309 324Right-handed alpha
Helix 15
AB6
A
325 327Right-handed 310
Helix 16
AB7
A
352 367Right-handed alpha
Helix 17
AB8
A
371 388Right-handed alpha
Helix 18
AB9
A
390 399Right-handed alpha
Helix 19
AC1
A
681 695Right-handed alpha
Helix 20
AC2
A
710 728Right-handed alpha
Helix 21
AC3
A
729 734Right-handed 310
Helix 22
AC4
A
751 761Right-handed 310
Helix 23
AC5
A
763 785Right-handed alpha
Helix 24
AC6
A
788 801Right-handed alpha
Helix 25
AC7
A
805 808Right-handed 310
Helix 26
AC8
A
809 818Right-handed alpha
Helix 27
AC9
A
821 842Right-handed alpha
Helix 28
AD1
A
844 856Right-handed alpha
Helix 29
AD2
A
857 861Right-handed 310
Helix 30
AD3
A
863 877Right-handed alpha
Helix 31
AD4
A
878 889Right-handed alpha
Helix 32
AD5
A
890 898Right-handed 310
Helix 33
AD6
A
904 913Right-handed alpha
Helix 34
AD7
A
915 920Right-handed 310
Helix 35
AD8
A
922 937Right-handed alpha
Helix 36
AD9
A
938 940Right-handed 310
Helix 37
AE1
A
950 964Right-handed alpha
Helix 38
AE2
A
997 1017Right-handed alpha
Helix 39
AE3
A
1020 1038Right-handed alpha
Helix 40
AE4
A
1068 1078Right-handed alpha
Helix 41
AE5
A
1080 1083Right-handed 310
Helix 42
AE6
A
1084 1101Right-handed alpha
Helix 43
AE7
A
1102 1107Right-handed alpha
Helix 44
AE8
A
1133 1135Right-handed 310
Helix 45
AE9
A
1136 1160Right-handed alpha
Helix 46
AF1
A
1235 1254Right-handed alpha
Helix 47
AF2
A
1263 1280Right-handed alpha
Helix 48
AF3
A
1281 1283Right-handed 310
Helix 49
AF4
A
1284 1289Right-handed alpha
Helix 50
AF5
A
1291 1303Right-handed alpha
Helix 51
AF6
A
1306 1322Right-handed alpha
Helix 52
AF7
A
1325 1329Right-handed 310
Helix 53
AF8
A
1355 1361Right-handed alpha
Helix 54
AF9
A
1361 1375Right-handed alpha
Helix 55
AG1
A
1376 1377Right-handed 310
Helix 56
AG2
A
1420 1426Right-handed 310
Helix 57
AG3
A
1427 1441Right-handed alpha
Helix 58
AG4
A
1443 1460Right-handed alpha
Helix 59
AG5
A
1463 1468Right-handed alpha
Helix 60
AG6
A
1471 1486Right-handed alpha
Helix 61
AG7
A
1491 1494Right-handed 310
Helix 62
AG8
A
1495 1507Right-handed alpha
Helix 63
AG9
A
1518 1532Right-handed alpha
Helix 64
AH1
A
1535 1538Right-handed 310
Helix 65
AH2
A
1539 1554Right-handed alpha
Helix 66
AH3
A
1564 1579Right-handed alpha
Helix 67
AH4
A
1583 1601Right-handed alpha
Helix 68
AH5
A
1601 1622Right-handed alpha
Helix 69
AH6
A
1629 1643Right-handed alpha
Helix 70
AH7
A
1644 1649Right-handed 310
Helix 71
AH8
A
1651 1659Right-handed alpha
Helix 72
AH9
A
1667 1689Right-handed alpha
Helix 73
AI1
A
1690 1701Right-handed alpha
Helix 74
AI2
A
1704 1708Right-handed 310
Helix 75
AI3
A
1709 1718Right-handed alpha
Helix 76
AI4
A
1737 1760Right-handed alpha
Helix 77
AI5
A
1767 1792Right-handed alpha
Helix 78
AI6
A
1794 1806Right-handed alpha
Helix 79
AI7
A
1816 1827Right-handed alpha
Helix 80
AI8
A
1828 1830Right-handed 310
Helix 81
AI9
A
1831 1845Right-handed alpha
Helix 82
AJ1
A
1849 1857Right-handed alpha
Helix 83
AJ2
A
1890 1909Right-handed alpha
Helix 84
AJ3
A
1915 1932Right-handed alpha
Helix 85
AJ4
A
1935 1947Right-handed alpha
Helix 86
AJ5
A
1948 1961Right-handed alpha
Helix 87
AJ6
A
1962 1967Right-handed alpha
Helix 88
AJ7
A
1968 1980Right-handed alpha
Helix 89
AJ8
A
1981 1982Right-handed 310
Helix 90
AJ9
A
1983 1985Right-handed 310
Helix 91
AK1
A
1986 1997Right-handed alpha
Helix 92
AK2
A
2003 2024Right-handed alpha
Helix 93
AK3
A
2025 2033Right-handed alpha
Helix 94
AK4
A
2034 2048Right-handed alpha
Helix 95
AK5
A
2049 2054Right-handed alpha
Helix 96
AK6
A
2054 2067Right-handed alpha
Helix 97
AK7
A
2098 2111Right-handed alpha
Helix 98
AK8
A
2117 2127Right-handed alpha
Helix 99
AK9
A
2129 2139Right-handed alpha
Helix 100
AL1
A
2143 2145Right-handed 310
Helix 101
AL2
A
2146 2159Right-handed alpha
Helix 102
AL3
A
2164 2183Right-handed alpha
Helix 103
AL4
A
2203 2211Right-handed alpha
Helix 104
AL5
A
2214 2232Right-handed alpha
Helix 105
AL6
A
2238 2242Right-handed 310
Helix 106
AL7
A
2244 2246Right-handed 310
Helix 107
AL8
A
2247 2269Right-handed alpha
Helix 108
AL9
A
2273 2290Right-handed alpha
Helix 109
AM1
A
2290 2298Right-handed alpha
Helix 110
AM2
A
2299 2301Right-handed 310
Helix 111
AM3
A
2302 2322Right-handed alpha
Helix 112
AM4
A
2355 2372Right-handed alpha
Helix 113
AM5
A
2390 2402Right-handed alpha
Helix 114
AM6
A
2404 2413Right-handed alpha
Helix 115
AM7
A
2414 2420Right-handed alpha
Helix 116
AM8
A
2440 2443Right-handed 310
Helix 117
AM9
A
2444 2459Right-handed alpha
Helix 118
AN1
A
2462 2478Right-handed alpha
Helix 119
AN2
A
2498 2514Right-handed alpha
Helix 120
AN3
A
2515 2517Right-handed 310
Helix 121
AN4
A
2539 2542Right-handed 310
Helix 122
AN5
A
2543 2565Right-handed alpha
Helix 123
AN6
A
2595 2600Right-handed 310
Helix 124
AN7
A
2620 2629Right-handed alpha
Helix 125
AN8
A
2669 2686Right-handed alpha
Helix 126
AN9
A
2695 2710Right-handed alpha
Helix 127
AO1
A
2711 2713Right-handed 310
Helix 128
AO2
A
2715 2733Right-handed alpha
Helix 129
AO3
A
2740 2755Right-handed alpha
Helix 130
AO4
A
2758 2773Right-handed alpha
Helix 131
AO5
A
2777 2792Right-handed alpha
Helix 132
AO6
A
2797 2820Right-handed alpha
Helix 133
AO7
A
2822 2826Right-handed 310
Helix 134
AO8
A
2827 2845Right-handed alpha
Helix 135
AO9
A
2854 2866Right-handed alpha
Helix 136
AP1
A
2873 2890Right-handed alpha
Helix 137
AP2
A
2894 2910Right-handed alpha
Helix 138
AP3
A
2913 2931Right-handed alpha
Helix 139
AP4
A
2954 2970Right-handed alpha
Helix 140
AP5
A
2971 2990Right-handed alpha
Helix 141
AP6
A
2991 2994Right-handed 310
Helix 142
AP7
A
2995 3005Right-handed alpha
Helix 143
AP8
A
3010 3028Right-handed alpha
Helix 144
AP9
A
3030 3046Right-handed alpha
Helix 145
AQ1
A
3050 3066Right-handed alpha
Helix 146
AQ2
A
3068 3073Right-handed alpha
Helix 147
AQ3
A
3074 3080Right-handed alpha
Helix 148
AQ4
A
3086 3104Right-handed alpha
Helix 149
AQ5
A
3108 3120Right-handed alpha
Helix 150
AQ6
A
3126 3137Right-handed alpha
Helix 151
AQ7
B
84 106Right-handed alpha
Helix 152
AQ8
B
115 135Right-handed alpha
Helix 153
AQ9
B
137 155Right-handed alpha
Helix 154
AR1
B
157 173Right-handed alpha
Helix 155
AR2
B
176 194Right-handed alpha
Helix 156
AR3
B
196 216Right-handed alpha
Helix 157
AR4
B
259 281Right-handed alpha
Helix 158
AR5
B
288 297Right-handed alpha
Helix 159
AR6
B
315 331Right-handed alpha
Helix 160
AR7
B
333 345Right-handed alpha
Helix 161
AR8
B
346 348Right-handed 310
Helix 162
AR9
B
349 365Right-handed alpha
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There are 2 sheets in PDB entry 9PMW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2 5first strand
Strand 2
C
13 16anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4 6first strand
Strand 2
E
12 14anti-parallel
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