Analysis of interatomic Contacts of Structural Units in PDB entry:
9PMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PMY entry

There are 2 chains in PDB entry 9PMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 33LYS 565
B
 LYS 33LYS 565
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9PMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 46Right-handed 310
Helix 2
AA2
A
66 77Right-handed alpha
Helix 3
AA3
A
90 102Right-handed alpha
Helix 4
AA4
A
110 112Right-handed 310
Helix 5
AA5
A
113 120Right-handed alpha
Helix 6
AA6
A
126 134Right-handed alpha
Helix 7
AA7
A
134 142Right-handed alpha
Helix 8
AA8
A
143 149Right-handed 310
Helix 9
AA9
A
180 186Right-handed alpha
Helix 10
AB1
A
193 208Right-handed alpha
Helix 11
AB2
A
226 232Right-handed alpha
Helix 12
AB3
A
233 239Right-handed alpha
Helix 13
AB4
A
263 279Right-handed alpha
Helix 14
AB5
A
290 300Right-handed alpha
Helix 15
AB6
A
313 323Right-handed alpha
Helix 16
AB7
A
325 328Right-handed 310
Helix 17
AB8
A
366 377Right-handed alpha
Helix 18
AB9
A
379 389Right-handed alpha
Helix 19
AC1
A
405 415Right-handed alpha
Helix 20
AC2
A
417 423Right-handed alpha
Helix 21
AC3
A
451 457Right-handed alpha
Helix 22
AC4
A
460 470Right-handed alpha
Helix 23
AC5
A
474 479Right-handed 310
Helix 24
AC6
A
481 485Right-handed 310
Helix 25
AC7
A
492 496Right-handed 310
Helix 26
AC8
A
500 524Right-handed alpha
Helix 27
AC9
A
525 527Right-handed 310
Helix 28
AD1
A
528 543Right-handed alpha
Helix 29
AD2
A
544 565Right-handed alpha
Helix 30
AD3
B
41 46Right-handed 310
Helix 31
AD4
B
66 77Right-handed alpha
Helix 32
AD5
B
89 102Right-handed alpha
Helix 33
AD6
B
110 112Right-handed 310
Helix 34
AD7
B
113 120Right-handed alpha
Helix 35
AD8
B
126 134Right-handed alpha
Helix 36
AD9
B
134 142Right-handed alpha
Helix 37
AE1
B
143 149Right-handed 310
Helix 38
AE2
B
180 186Right-handed alpha
Helix 39
AE3
B
193 208Right-handed alpha
Helix 40
AE4
B
226 232Right-handed alpha
Helix 41
AE5
B
233 239Right-handed alpha
Helix 42
AE6
B
263 279Right-handed alpha
Helix 43
AE7
B
290 301Right-handed alpha
Helix 44
AE8
B
309 312Right-handed 310
Helix 45
AE9
B
313 323Right-handed alpha
Helix 46
AF1
B
325 328Right-handed 310
Helix 47
AF2
B
366 377Right-handed alpha
Helix 48
AF3
B
379 389Right-handed alpha
Helix 49
AF4
B
405 415Right-handed alpha
Helix 50
AF5
B
417 423Right-handed alpha
Helix 51
AF6
B
451 457Right-handed alpha
Helix 52
AF7
B
460 470Right-handed alpha
Helix 53
AF8
B
474 479Right-handed 310
Helix 54
AF9
B
481 485Right-handed 310
Helix 55
AG1
B
500 524Right-handed alpha
Helix 56
AG2
B
525 527Right-handed 310
Helix 57
AG3
B
528 543Right-handed alpha
Helix 58
AG4
B
544 565Right-handed alpha
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There are 10 sheets in PDB entry 9PMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
48 54parallel
Strand 3
A
107 109parallel
Strand 4
A
359 360anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
303 308parallel
Strand 3
A
175 179anti-parallel
Strand 4
A
330 333anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
214 215anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
257 259anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 398first strand
Strand 2
A
401 404anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 84first strand
Strand 2
B
48 54parallel
Strand 3
B
107 109parallel
Strand 4
B
359 360anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 219first strand
Strand 2
B
303 308parallel
Strand 3
B
175 179anti-parallel
Strand 4
B
330 333anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
214 215anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
257 259anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 398first strand
Strand 2
B
401 404anti-parallel
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