Analysis of interatomic Contacts of Structural Units in PDB entry:
9PNQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PNQ entry

There is 1 chain in PDB entry 9PNQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1007LYS 2101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 9PNQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1050 1059Right-handed alpha
Helix 2
AA2
A
1061 1070Right-handed alpha
Helix 3
AA3
A
1079 1110Right-handed alpha
Helix 4
AA4
A
1112 1118Right-handed alpha
Helix 5
AA5
A
1122 1126Right-handed 310
Helix 6
AA6
A
1129 1133Right-handed 310
Helix 7
AA7
A
1145 1163Right-handed alpha
Helix 8
AA8
A
1164 1167Right-handed 310
Helix 9
AA9
A
1171 1180Right-handed alpha
Helix 10
AB1
A
1182 1186Right-handed 310
Helix 11
AB2
A
1189 1195Right-handed alpha
Helix 12
AB3
A
1200 1216Right-handed alpha
Helix 13
AB4
A
1224 1229Right-handed alpha
Helix 14
AB5
A
1229 1246Right-handed alpha
Helix 15
AB6
A
1256 1260Right-handed alpha
Helix 16
AB7
A
1279 1284Right-handed 310
Helix 17
AB8
A
1286 1293Right-handed alpha
Helix 18
AB9
A
1322 1333Right-handed alpha
Helix 19
AC1
A
1340 1351Right-handed alpha
Helix 20
AC2
A
1351 1360Right-handed alpha
Helix 21
AC3
A
1365 1369Right-handed 310
Helix 22
AC4
A
1370 1400Right-handed alpha
Helix 23
AC5
A
1404 1408Right-handed 310
Helix 24
AC6
A
1433 1438Right-handed alpha
Helix 25
AC7
A
1454 1468Right-handed alpha
Helix 26
AC8
A
1471 1475Right-handed 310
Helix 27
AC9
A
1476 1490Right-handed alpha
Helix 28
AD1
A
1492 1506Right-handed alpha
Helix 29
AD2
A
1511 1521Right-handed alpha
Helix 30
AD3
A
1522 1524Right-handed 310
Helix 31
AD4
A
1525 1540Right-handed alpha
Helix 32
AD5
A
1543 1546Right-handed 310
Helix 33
AD6
A
1559 1569Right-handed alpha
Helix 34
AD7
A
1575 1584Right-handed alpha
Helix 35
AD8
A
1595 1603Right-handed alpha
Helix 36
AD9
A
1607 1627Right-handed alpha
Helix 37
AE1
A
1630 1648Right-handed alpha
Helix 38
AE2
A
1663 1665Right-handed 310
Helix 39
AE3
A
1666 1675Right-handed alpha
Helix 40
AE4
A
1678 1708Right-handed alpha
Helix 41
AE5
A
1712 1719Right-handed alpha
Helix 42
AE6
A
1724 1744Right-handed alpha
Helix 43
AE7
A
1776 1790Right-handed alpha
Helix 44
AE8
A
1790 1803Right-handed alpha
Helix 45
AE9
A
1803 1840Right-handed alpha
Helix 46
AF1
A
1852 1862Right-handed alpha
Helix 47
AF2
A
1863 1867Right-handed 310
Helix 48
AF3
A
1915 1924Right-handed alpha
Helix 49
AF4
A
1925 1936Right-handed alpha
Helix 50
AF5
A
1956 1972Right-handed alpha
Helix 51
AF6
A
1975 1991Right-handed alpha
Helix 52
AF7
A
1992 1996Right-handed 310
Helix 53
AF8
A
1997 2009Right-handed alpha
Helix 54
AF9
A
2011 2015Right-handed 310
Helix 55
AG1
A
2018 2048Right-handed alpha
Helix 56
AG2
A
2076 2101Right-handed alpha
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There are 15 sheets in PDB entry 9PNQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1035 1036first strand
Strand 2
A
1218 1219anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1135 1138first strand
Strand 2
A
1141 1144anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1198 1199first strand
Strand 2
A
1266 1272anti-parallel
Strand 3
A
1249 1255anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1301 1302first strand
Strand 2
A
1410 1411anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1312 1313first strand
Strand 2
A
1316 1320anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1338 1339first strand
Strand 2
A
1440 1441anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1414 1416first strand
Strand 2
A
1422 1424anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1445 1447first strand
Strand 2
A
1547 1549anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1552 1554first strand
Strand 2
A
1951 1953anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1587 1589first strand
Strand 2
A
2052 2054anti-parallel
Strand 3
A
2064 2065anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1651 1653first strand
Strand 2
A
1659 1661anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1745 1750first strand
Strand 2
A
1753 1758anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1870 1871first strand
Strand 2
A
1876 1877anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1881 1884first strand
Strand 2
A
1906 1909anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1891 1893first strand
Strand 2
A
1902 1903anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il