Analysis of interatomic Contacts of Structural Units in PDB entry:
9PNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PNW entry

There are 2 chains in PDB entry 9PNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 T 4 C 22
A
 GLY 1008HIS 3500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are121 helices in PDB entry 9PNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1030 1034Right-handed alpha
Helix 2
AA2
A
1050 1057Right-handed alpha
Helix 3
AA3
A
1061 1070Right-handed alpha
Helix 4
AA4
A
1080 1110Right-handed alpha
Helix 5
AA5
A
1112 1120Right-handed alpha
Helix 6
AA6
A
1122 1126Right-handed 310
Helix 7
AA7
A
1128 1135Right-handed 310
Helix 8
AA8
A
1145 1163Right-handed alpha
Helix 9
AA9
A
1171 1180Right-handed alpha
Helix 10
AB1
A
1191 1196Right-handed 310
Helix 11
AB2
A
1199 1216Right-handed alpha
Helix 12
AB3
A
1224 1229Right-handed alpha
Helix 13
AB4
A
1230 1246Right-handed alpha
Helix 14
AB5
A
1279 1283Right-handed 310
Helix 15
AB6
A
1286 1293Right-handed alpha
Helix 16
AB7
A
1322 1334Right-handed alpha
Helix 17
AB8
A
1340 1351Right-handed alpha
Helix 18
AB9
A
1351 1360Right-handed alpha
Helix 19
AC1
A
1365 1369Right-handed 310
Helix 20
AC2
A
1370 1400Right-handed alpha
Helix 21
AC3
A
1404 1408Right-handed 310
Helix 22
AC4
A
1435 1438Right-handed 310
Helix 23
AC5
A
1455 1468Right-handed alpha
Helix 24
AC6
A
1476 1489Right-handed alpha
Helix 25
AC7
A
1492 1506Right-handed alpha
Helix 26
AC8
A
1511 1521Right-handed alpha
Helix 27
AC9
A
1522 1524Right-handed 310
Helix 28
AD1
A
1527 1541Right-handed alpha
Helix 29
AD2
A
1559 1569Right-handed alpha
Helix 30
AD3
A
1575 1584Right-handed alpha
Helix 31
AD4
A
1595 1603Right-handed alpha
Helix 32
AD5
A
1607 1627Right-handed alpha
Helix 33
AD6
A
1630 1648Right-handed alpha
Helix 34
AD7
A
1668 1675Right-handed alpha
Helix 35
AD8
A
1678 1708Right-handed alpha
Helix 36
AD9
A
1712 1718Right-handed alpha
Helix 37
AE1
A
1719 1722Right-handed 310
Helix 38
AE2
A
1724 1743Right-handed alpha
Helix 39
AE3
A
1768 1772Right-handed 310
Helix 40
AE4
A
1776 1790Right-handed alpha
Helix 41
AE5
A
1790 1803Right-handed alpha
Helix 42
AE6
A
1803 1840Right-handed alpha
Helix 43
AE7
A
1852 1862Right-handed alpha
Helix 44
AE8
A
1863 1867Right-handed 310
Helix 45
AE9
A
1915 1925Right-handed alpha
Helix 46
AF1
A
1926 1936Right-handed alpha
Helix 47
AF2
A
1956 1972Right-handed alpha
Helix 48
AF3
A
1975 1990Right-handed alpha
Helix 49
AF4
A
1992 1996Right-handed 310
Helix 50
AF5
A
1997 2009Right-handed alpha
Helix 51
AF6
A
2018 2048Right-handed alpha
Helix 52
AF7
A
2076 2101Right-handed alpha
Helix 53
AF8
A
2142 2146Right-handed 310
Helix 54
AF9
A
2151 2168Right-handed alpha
Helix 55
AG1
A
2176 2188Right-handed alpha
Helix 56
AG2
A
2196 2203Right-handed alpha
Helix 57
AG3
A
2222 2244Right-handed alpha
Helix 58
AG4
A
2249 2265Right-handed alpha
Helix 59
AG5
A
2275 2294Right-handed alpha
Helix 60
AG6
A
2299 2318Right-handed alpha
Helix 61
AG7
A
2318 2323Right-handed alpha
Helix 62
AG8
A
2329 2348Right-handed alpha
Helix 63
AG9
A
2376 2382Right-handed alpha
Helix 64
AH1
A
2395 2409Right-handed alpha
Helix 65
AH2
A
2410 2413Right-handed 310
Helix 66
AH3
A
2426 2443Right-handed alpha
Helix 67
AH4
A
2449 2470Right-handed alpha
Helix 68
AH5
A
2471 2473Right-handed 310
Helix 69
AH6
A
2474 2486Right-handed alpha
Helix 70
AH7
A
2489 2494Right-handed 310
Helix 71
AH8
A
2501 2517Right-handed alpha
Helix 72
AH9
A
2530 2540Right-handed alpha
Helix 73
AI1
A
2544 2550Right-handed alpha
Helix 74
AI2
A
2555 2559Right-handed 310
Helix 75
AI3
A
2564 2585Right-handed alpha
Helix 76
AI4
A
2593 2615Right-handed alpha
Helix 77
AI5
A
2624 2641Right-handed alpha
Helix 78
AI6
A
2665 2674Right-handed alpha
Helix 79
AI7
A
2681 2684Right-handed 310
Helix 80
AI8
A
2685 2693Right-handed alpha
Helix 81
AI9
A
2695 2708Right-handed alpha
Helix 82
AJ1
A
2715 2736Right-handed alpha
Helix 83
AJ2
A
2737 2744Right-handed alpha
Helix 84
AJ3
A
2751 2763Right-handed alpha
Helix 85
AJ4
A
2766 2773Right-handed 310
Helix 86
AJ5
A
2775 2785Right-handed alpha
Helix 87
AJ6
A
2785 2805Right-handed alpha
Helix 88
AJ7
A
2807 2825Right-handed alpha
Helix 89
AJ8
A
2834 2841Right-handed alpha
Helix 90
AJ9
A
2853 2867Right-handed alpha
Helix 91
AK1
A
2870 2884Right-handed alpha
Helix 92
AK2
A
2884 2907Right-handed alpha
Helix 93
AK3
A
2909 2914Right-handed alpha
Helix 94
AK4
A
2936 2943Right-handed alpha
Helix 95
AK5
A
3010 3021Right-handed alpha
Helix 96
AK6
A
3049 3057Right-handed 310
Helix 97
AK7
A
3061 3101Right-handed alpha
Helix 98
AK8
A
3102 3106Right-handed 310
Helix 99
AK9
A
3117 3126Right-handed alpha
Helix 100
AL1
A
3128 3139Right-handed alpha
Helix 101
AL2
A
3148 3155Right-handed alpha
Helix 102
AL3
A
3156 3159Right-handed 310
Helix 103
AL4
A
3173 3188Right-handed alpha
Helix 104
AL5
A
3189 3197Right-handed alpha
Helix 105
AL6
A
3209 3236Right-handed alpha
Helix 106
AL7
A
3239 3266Right-handed alpha
Helix 107
AL8
A
3266 3274Right-handed alpha
Helix 108
AL9
A
3277 3297Right-handed alpha
Helix 109
AM1
A
3300 3307Right-handed alpha
Helix 110
AM2
A
3318 3320Right-handed 310
Helix 111
AM3
A
3321 3327Right-handed alpha
Helix 112
AM4
A
3328 3338Right-handed alpha
Helix 113
AM5
A
3341 3346Right-handed alpha
Helix 114
AM6
A
3347 3351Right-handed 310
Helix 115
AM7
A
3357 3385Right-handed alpha
Helix 116
AM8
A
3389 3398Right-handed alpha
Helix 117
AM9
A
3403 3407Right-handed 310
Helix 118
AN1
A
3417 3441Right-handed alpha
Helix 119
AN2
A
3441 3449Right-handed alpha
Helix 120
AN3
A
3467 3473Right-handed alpha
Helix 121
AN4
A
3493 3500Right-handed alpha
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There are 20 sheets in PDB entry 9PNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1035 1036first strand
Strand 2
A
1218 1219anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1136 1137first strand
Strand 2
A
1142 1143anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1249 1253first strand
Strand 2
A
1268 1272anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1301 1302first strand
Strand 2
A
1410 1411anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1312 1313first strand
Strand 2
A
1316 1320anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1338 1339first strand
Strand 2
A
1440 1441anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1414 1416first strand
Strand 2
A
1422 1424anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1445 1447first strand
Strand 2
A
1547 1549anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1552 1554first strand
Strand 2
A
1950 1953anti-parallel
Strand 3
A
1944 1945anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1587 1589first strand
Strand 2
A
2052 2054anti-parallel
Strand 3
A
2064 2065anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1745 1750first strand
Strand 2
A
1753 1758anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1870 1871first strand
Strand 2
A
1876 1877anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1881 1884first strand
Strand 2
A
1906 1909anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1891 1894first strand
Strand 2
A
1901 1903anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2126 2127first strand
Strand 2
A
2134 2136anti-parallel
Strand 3
A
2171 2175anti-parallel
Strand 4
A
2215 2219parallel
Strand 5
A
2208 2210anti-parallel
Strand 6
A
2368 2370parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2930 2935first strand
Strand 2
A
2964 2969anti-parallel
Strand 3
A
2948 2953anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2988 2989first strand
Strand 2
A
2992 2993anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3006 3008first strand
Strand 2
A
3041 3046anti-parallel
Strand 3
A
3031 3035anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3108 3110first strand
Strand 2
A
3145 3147anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3161 3162first strand
Strand 2
A
3171 3172anti-parallel
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