Analysis of interatomic Contacts of Structural Units in PDB entry:
9PPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PPY entry

There are 7 chains in PDB entry 9PPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 47PHE 329
B
 LEU 5PHE 354
C
 ASP 5ASN 340
D
 ALA 12ARG 62
E
 VAL 2LEU 235
F
 GLY 2GLY 3
F
 MET 5MET 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9PPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 75Right-handed alpha
Helix 2
AA2
A
82 100Right-handed alpha
Helix 3
AA3
A
101 112Right-handed alpha
Helix 4
AA4
A
117 152Right-handed alpha
Helix 5
AA5
A
152 158Right-handed alpha
Helix 6
AA6
A
161 186Right-handed alpha
Helix 7
AA7
A
205 222Right-handed alpha
Helix 8
AA8
A
222 244Right-handed alpha
Helix 9
AA9
A
250 287Right-handed alpha
Helix 10
AB1
A
293 319Right-handed alpha
Helix 11
AB2
A
322 327Right-handed alpha
Helix 12
AB3
B
6 32Right-handed alpha
Helix 13
AB4
B
207 216Right-handed 310
Helix 14
AB5
B
228 231Right-handed 310
Helix 15
AB6
B
241 255Right-handed alpha
Helix 16
AB7
B
256 260Right-handed 310
Helix 17
AB8
B
270 279Right-handed alpha
Helix 18
AB9
B
282 286Right-handed 310
Helix 19
AC1
B
298 310Right-handed alpha
Helix 20
AC2
B
330 351Right-handed alpha
Helix 21
AC3
C
6 26Right-handed alpha
Helix 22
AC4
C
29 34Right-handed alpha
Helix 23
AC5
D
13 24Right-handed alpha
Helix 24
AC6
D
29 44Right-handed alpha
Helix 25
AC7
E
53 56Right-handed 310
Helix 26
AC8
E
87 91Right-handed 310
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There are 14 sheets in PDB entry 9PPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
195 200anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 190first strand
Strand 2
B
195 200anti-parallel
Strand 3
B
33 39parallel
Strand 4
B
220 226parallel
Strand 5
B
263 269parallel
Strand 6
B
319 323parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 51first strand
Strand 2
C
336 340anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 320anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
89 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
120 125anti-parallel
Strand 4
C
134 140anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
165 170anti-parallel
Strand 4
C
175 181anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 192first strand
Strand 2
C
198 202anti-parallel
Strand 3
C
208 212anti-parallel
Strand 4
C
218 222anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
249 254anti-parallel
Strand 4
C
259 265anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
276 278first strand
Strand 2
C
284 287anti-parallel
Strand 3
C
293 298anti-parallel
Strand 4
C
304 309anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
117 119parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
45 51anti-parallel
Strand 3
E
33 39anti-parallel
Strand 4
E
93 99anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 129first strand
Strand 2
E
143 149anti-parallel
Strand 3
E
199 204anti-parallel
Strand 4
E
191 195anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
135 136first strand
Strand 2
E
231 234parallel
Strand 3
E
213 219anti-parallel
Strand 4
E
162 167anti-parallel
Strand 5
E
174 177anti-parallel
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