Analysis of interatomic Contacts of Structural Units in PDB entry:
9PQQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PQQ entry

There are 12 chains in PDB entry 9PQQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	MET 327
B	SER 2	MET 327
C	SER 2	MET 327
D	SER 2	MET 327
E	SER 2	MET 327
F	SER 2	MET 327
G	GLU 121	MET 327
H	GLU 121	MET 327
I	GLU 121	MET 327
J	GLU 121	MET 327
K	GLU 121	MET 327
L	GLU 121	MET 327

There are128 helices in PDB entry 9PQQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	30	Right-handed alpha
Helix 2	AA2	A	35	38	Right-handed 310
Helix 3	AA3	A	73	78	Right-handed alpha
Helix 4	AA4	A	92	100	Right-handed alpha
Helix 5	AA5	A	110	114	Right-handed 310
Helix 6	AA6	A	120	132	Right-handed alpha
Helix 7	AA7	A	133	140	Right-handed alpha
Helix 8	AA8	A	144	162	Right-handed alpha
Helix 9	AA9	A	182	195	Right-handed alpha
Helix 10	AB1	A	224	228	Right-handed 310
Helix 11	AB2	A	232	239	Right-handed alpha
Helix 12	AB3	A	266	271	Right-handed alpha
Helix 13	AB4	A	285	294	Right-handed alpha
Helix 14	AB5	A	307	323	Right-handed alpha
Helix 15	AB6	B	23	35	Right-handed alpha
Helix 16	AB7	B	36	38	Right-handed 310
Helix 17	AB8	B	73	78	Right-handed alpha
Helix 18	AB9	B	93	100	Right-handed alpha
Helix 19	AC1	B	110	114	Right-handed 310
Helix 20	AC2	B	119	132	Right-handed alpha
Helix 21	AC3	B	133	140	Right-handed alpha
Helix 22	AC4	B	144	161	Right-handed alpha
Helix 23	AC5	B	182	194	Right-handed alpha
Helix 24	AC6	B	224	228	Right-handed 310
Helix 25	AC7	B	232	239	Right-handed alpha
Helix 26	AC8	B	266	271	Right-handed alpha
Helix 27	AC9	B	285	293	Right-handed alpha
Helix 28	AD1	B	307	323	Right-handed alpha
Helix 29	AD2	C	23	35	Right-handed alpha
Helix 30	AD3	C	36	38	Right-handed 310
Helix 31	AD4	C	73	78	Right-handed alpha
Helix 32	AD5	C	92	100	Right-handed alpha
Helix 33	AD6	C	110	114	Right-handed 310
Helix 34	AD7	C	120	132	Right-handed alpha
Helix 35	AD8	C	133	140	Right-handed alpha
Helix 36	AD9	C	144	162	Right-handed alpha
Helix 37	AE1	C	182	194	Right-handed alpha
Helix 38	AE2	C	224	228	Right-handed 310
Helix 39	AE3	C	232	238	Right-handed alpha
Helix 40	AE4	C	266	271	Right-handed alpha
Helix 41	AE5	C	285	293	Right-handed alpha
Helix 42	AE6	C	307	323	Right-handed alpha
Helix 43	AE7	D	23	35	Right-handed alpha
Helix 44	AE8	D	36	38	Right-handed 310
Helix 45	AE9	D	72	78	Right-handed alpha
Helix 46	AF1	D	93	100	Right-handed alpha
Helix 47	AF2	D	110	114	Right-handed 310
Helix 48	AF3	D	120	132	Right-handed alpha
Helix 49	AF4	D	133	140	Right-handed alpha
Helix 50	AF5	D	144	162	Right-handed alpha
Helix 51	AF6	D	182	195	Right-handed alpha
Helix 52	AF7	D	224	228	Right-handed 310
Helix 53	AF8	D	232	238	Right-handed alpha
Helix 54	AF9	D	266	271	Right-handed alpha
Helix 55	AG1	D	285	293	Right-handed alpha
Helix 56	AG2	D	307	323	Right-handed alpha
Helix 57	AG3	E	23	33	Right-handed alpha
Helix 58	AG4	E	73	78	Right-handed alpha
Helix 59	AG5	E	92	100	Right-handed alpha
Helix 60	AG6	E	110	114	Right-handed 310
Helix 61	AG7	E	119	132	Right-handed alpha
Helix 62	AG8	E	133	140	Right-handed alpha
Helix 63	AG9	E	144	162	Right-handed alpha
Helix 64	AH1	E	182	195	Right-handed alpha
Helix 65	AH2	E	232	238	Right-handed alpha
Helix 66	AH3	E	266	271	Right-handed alpha
Helix 67	AH4	E	285	293	Right-handed alpha
Helix 68	AH5	E	309	323	Right-handed alpha
Helix 69	AH6	F	23	35	Right-handed alpha
Helix 70	AH7	F	73	78	Right-handed alpha
Helix 71	AH8	F	92	100	Right-handed alpha
Helix 72	AH9	F	118	132	Right-handed alpha
Helix 73	AI1	F	133	141	Right-handed alpha
Helix 74	AI2	F	144	162	Right-handed alpha
Helix 75	AI3	F	182	194	Right-handed alpha
Helix 76	AI4	F	232	239	Right-handed alpha
Helix 77	AI5	F	268	272	Right-handed 310
Helix 78	AI6	F	285	294	Right-handed alpha
Helix 79	AI7	F	307	323	Right-handed alpha
Helix 80	AI8	G	122	132	Right-handed alpha
Helix 81	AI9	G	133	141	Right-handed alpha
Helix 82	AJ1	G	144	162	Right-handed alpha
Helix 83	AJ2	G	182	194	Right-handed alpha
Helix 84	AJ3	G	224	228	Right-handed 310
Helix 85	AJ4	G	232	238	Right-handed alpha
Helix 86	AJ5	G	266	272	Right-handed alpha
Helix 87	AJ6	G	285	293	Right-handed alpha
Helix 88	AJ7	G	307	323	Right-handed alpha
Helix 89	AJ8	H	122	132	Right-handed alpha
Helix 90	AJ9	H	133	140	Right-handed alpha
Helix 91	AK1	H	144	161	Right-handed alpha
Helix 92	AK2	H	182	194	Right-handed alpha
Helix 93	AK3	H	224	228	Right-handed 310
Helix 94	AK4	H	232	239	Right-handed alpha
Helix 95	AK5	H	285	293	Right-handed alpha
Helix 96	AK6	H	307	323	Right-handed alpha
Helix 97	AK7	I	122	132	Right-handed alpha
Helix 98	AK8	I	133	140	Right-handed alpha
Helix 99	AK9	I	144	162	Right-handed alpha
Helix 100	AL1	I	182	194	Right-handed alpha
Helix 101	AL2	I	232	239	Right-handed alpha
Helix 102	AL3	I	285	293	Right-handed alpha
Helix 103	AL4	I	307	323	Right-handed alpha
Helix 104	AL5	J	122	132	Right-handed alpha
Helix 105	AL6	J	133	140	Right-handed alpha
Helix 106	AL7	J	144	162	Right-handed alpha
Helix 107	AL8	J	182	195	Right-handed alpha
Helix 108	AL9	J	232	239	Right-handed alpha
Helix 109	AM1	J	266	271	Right-handed alpha
Helix 110	AM2	J	285	294	Right-handed alpha
Helix 111	AM3	J	307	323	Right-handed alpha
Helix 112	AM4	K	122	132	Right-handed alpha
Helix 113	AM5	K	133	140	Right-handed alpha
Helix 114	AM6	K	144	162	Right-handed alpha
Helix 115	AM7	K	182	196	Right-handed alpha
Helix 116	AM8	K	224	228	Right-handed 310
Helix 117	AM9	K	232	238	Right-handed alpha
Helix 118	AN1	K	266	272	Right-handed alpha
Helix 119	AN2	K	285	293	Right-handed alpha
Helix 120	AN3	K	307	323	Right-handed alpha
Helix 121	AN4	L	122	132	Right-handed alpha
Helix 122	AN5	L	133	140	Right-handed alpha
Helix 123	AN6	L	144	162	Right-handed alpha
Helix 124	AN7	L	182	194	Right-handed alpha
Helix 125	AN8	L	232	238	Right-handed alpha
Helix 126	AN9	L	266	272	Right-handed alpha
Helix 127	AO1	L	285	293	Right-handed alpha
Helix 128	AO2	L	307	323	Right-handed alpha

There are 51 sheets in PDB entry 9PQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	14	first strand
Strand 2	A	56	69	anti-parallel
Strand 3	A	40	49	anti-parallel
Strand 4	A	106	108	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	217	220	parallel
Strand 3	A	258	263	parallel
Strand 4	A	171	177	parallel
Strand 5	A	301	304	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	250	253	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	280	281	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	14	first strand
Strand 2	B	56	69	anti-parallel
Strand 3	B	40	49	anti-parallel
Strand 4	B	106	108	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	201	first strand
Strand 2	B	217	221	parallel
Strand 3	B	258	262	parallel
Strand 4	B	171	177	parallel
Strand 5	B	301	304	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	250	253	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	280	281	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	298	299	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	14	first strand
Strand 2	C	57	68	anti-parallel
Strand 3	C	40	48	anti-parallel
Strand 4	C	106	108	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	217	220	parallel
Strand 3	C	258	262	parallel
Strand 4	C	171	175	parallel
Strand 5	C	301	302	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	250	253	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	280	281	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	298	299	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	14	first strand
Strand 2	D	56	69	anti-parallel
Strand 3	D	40	49	anti-parallel
Strand 4	D	106	108	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	217	220	parallel
Strand 3	D	258	262	parallel
Strand 4	D	171	175	parallel
Strand 5	D	301	302	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	250	253	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	274	first strand
Strand 2	D	280	281	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	295	first strand
Strand 2	D	298	299	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	E	6	14	anti-parallel
Strand 3	E	57	69	anti-parallel
Strand 4	E	40	48	anti-parallel
Strand 5	E	106	108	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	201	first strand
Strand 2	E	217	221	parallel
Strand 3	E	258	262	parallel
Strand 4	E	171	177	parallel
Strand 5	E	301	304	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	247	first strand
Strand 2	E	250	253	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	273	274	first strand
Strand 2	E	280	281	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	295	first strand
Strand 2	E	298	299	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	16	first strand
Strand 2	F	56	68	anti-parallel
Strand 3	F	40	49	anti-parallel
Strand 4	F	106	109	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	201	first strand
Strand 2	F	217	220	parallel
Strand 3	F	258	262	parallel
Strand 4	F	171	177	parallel
Strand 5	F	301	304	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	247	first strand
Strand 2	F	250	253	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	274	first strand
Strand 2	F	280	281	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	201	first strand
Strand 2	G	217	221	parallel
Strand 3	G	258	262	parallel
Strand 4	G	171	177	parallel
Strand 5	G	301	304	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	247	first strand
Strand 2	G	250	253	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	273	274	first strand
Strand 2	G	280	281	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	294	295	first strand
Strand 2	G	298	299	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	201	first strand
Strand 2	H	217	221	parallel
Strand 3	H	258	262	parallel
Strand 4	H	171	177	parallel
Strand 5	H	301	304	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	244	247	first strand
Strand 2	H	250	253	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	273	274	first strand
Strand 2	H	280	281	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	294	295	first strand
Strand 2	H	298	299	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	199	201	first strand
Strand 2	I	217	221	parallel
Strand 3	I	258	262	parallel
Strand 4	I	171	177	parallel
Strand 5	I	301	304	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	244	247	first strand
Strand 2	I	250	253	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	273	274	first strand
Strand 2	I	280	281	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	294	295	first strand
Strand 2	I	298	299	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	199	201	first strand
Strand 2	J	217	221	parallel
Strand 3	J	258	262	parallel
Strand 4	J	171	177	parallel
Strand 5	J	301	304	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	244	247	first strand
Strand 2	J	250	253	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	273	274	first strand
Strand 2	J	280	281	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	199	201	first strand
Strand 2	K	217	221	parallel
Strand 3	K	258	262	parallel
Strand 4	K	171	177	parallel
Strand 5	K	301	304	parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	244	247	first strand
Strand 2	K	250	253	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	274	first strand
Strand 2	K	280	281	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	294	295	first strand
Strand 2	K	298	299	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	199	201	first strand
Strand 2	L	217	221	parallel
Strand 3	L	258	262	parallel
Strand 4	L	171	177	parallel
Strand 5	L	301	304	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	244	247	first strand
Strand 2	L	250	253	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	273	274	first strand
Strand 2	L	280	281	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	294	295	first strand
Strand 2	L	298	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PQQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PQQ