Analysis of interatomic Contacts of Structural Units in PDB entry:
9PQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PQW entry

There are 2 chains in PDB entry 9PQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 135SER 500
B
 U 1 A 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9PQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 143Right-handed alpha
Helix 2
AA2
A
145 151Right-handed alpha
Helix 3
AA3
A
152 163Right-handed alpha
Helix 4
AA4
A
169 181Right-handed alpha
Helix 5
AA5
A
182 191Right-handed alpha
Helix 6
AA6
A
194 205Right-handed alpha
Helix 7
AA7
A
207 220Right-handed alpha
Helix 8
AA8
A
221 228Right-handed alpha
Helix 9
AA9
A
230 242Right-handed alpha
Helix 10
AB1
A
243 254Right-handed alpha
Helix 11
AB2
A
255 257Right-handed 310
Helix 12
AB3
A
258 265Right-handed alpha
Helix 13
AB4
A
267 279Right-handed alpha
Helix 14
AB5
A
280 283Right-handed 310
Helix 15
AB6
A
284 292Right-handed alpha
Helix 16
AB7
A
293 302Right-handed alpha
Helix 17
AB8
A
305 319Right-handed alpha
Helix 18
AB9
A
327 343Right-handed alpha
Helix 19
AC1
A
343 350Right-handed alpha
Helix 20
AC2
A
352 363Right-handed alpha
Helix 21
AC3
A
367 378Right-handed alpha
Helix 22
AC4
A
382 388Right-handed alpha
Helix 23
AC5
A
391 403Right-handed alpha
Helix 24
AC6
A
404 417Right-handed alpha
Helix 25
AC7
A
428 435Right-handed alpha
Helix 26
AC8
A
438 455Right-handed alpha
Helix 27
AC9
A
460 479Right-handed alpha
Helix 28
AD1
A
479 484Right-handed alpha
Helix 29
AD2
A
486 497Right-handed alpha
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There are no sheets in PDB entry 9PQW
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il