Analysis of interatomic Contacts of Structural Units in PDB entry:
9PR6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PR6 entry

There are 4 chains in PDB entry 9PR6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 19	GLU 324
B	ARG 19	GLU 324
C	ARG 19	GLU 324
D	ARG 19	GLU 324

There are 32 helices in PDB entry 9PR6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	43	Right-handed alpha
Helix 2	AA2	A	43	51	Right-handed alpha
Helix 3	AA3	A	52	83	Right-handed alpha
Helix 4	AA4	A	105	118	Right-handed alpha
Helix 5	AA5	A	131	161	Right-handed alpha
Helix 6	AA6	A	162	169	Right-handed alpha
Helix 7	AA7	A	289	291	Right-handed 310
Helix 8	AA8	A	316	318	Right-handed 310
Helix 9	AA9	B	35	43	Right-handed alpha
Helix 10	AB1	B	43	51	Right-handed alpha
Helix 11	AB2	B	52	83	Right-handed alpha
Helix 12	AB3	B	105	118	Right-handed alpha
Helix 13	AB4	B	131	161	Right-handed alpha
Helix 14	AB5	B	162	169	Right-handed alpha
Helix 15	AB6	B	289	291	Right-handed 310
Helix 16	AB7	B	316	318	Right-handed 310
Helix 17	AB8	C	35	43	Right-handed alpha
Helix 18	AB9	C	43	51	Right-handed alpha
Helix 19	AC1	C	52	83	Right-handed alpha
Helix 20	AC2	C	105	118	Right-handed alpha
Helix 21	AC3	C	131	161	Right-handed alpha
Helix 22	AC4	C	162	169	Right-handed alpha
Helix 23	AC5	C	289	291	Right-handed 310
Helix 24	AC6	C	316	318	Right-handed 310
Helix 25	AC7	D	35	43	Right-handed alpha
Helix 26	AC8	D	43	51	Right-handed alpha
Helix 27	AC9	D	52	83	Right-handed alpha
Helix 28	AD1	D	105	118	Right-handed alpha
Helix 29	AD2	D	131	161	Right-handed alpha
Helix 30	AD3	D	162	169	Right-handed alpha
Helix 31	AD4	D	289	291	Right-handed 310
Helix 32	AD5	D	316	318	Right-handed 310

There are 24 sheets in PDB entry 9PR6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	D	311	314	parallel
Strand 3	D	303	305	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	184	193	anti-parallel
Strand 3	A	241	246	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	184	193	anti-parallel
Strand 3	A	176	181	anti-parallel
Strand 4	A	293	295	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	223	first strand
Strand 2	A	199	211	anti-parallel
Strand 3	A	234	237	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	223	first strand
Strand 2	A	199	211	anti-parallel
Strand 3	A	266	275	anti-parallel
Strand 4	A	281	288	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	321	323	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	311	314	anti-parallel
Strand 3	B	30	32	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	184	193	anti-parallel
Strand 3	B	241	246	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	184	193	anti-parallel
Strand 3	B	176	181	anti-parallel
Strand 4	B	293	295	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	223	first strand
Strand 2	B	199	211	anti-parallel
Strand 3	B	234	237	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	223	first strand
Strand 2	B	199	211	anti-parallel
Strand 3	B	266	275	anti-parallel
Strand 4	B	281	288	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	321	323	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	305	first strand
Strand 2	B	311	314	anti-parallel
Strand 3	C	30	32	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	184	193	anti-parallel
Strand 3	C	241	246	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	184	193	anti-parallel
Strand 3	C	176	181	anti-parallel
Strand 4	C	293	295	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	223	first strand
Strand 2	C	199	211	anti-parallel
Strand 3	C	234	237	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	223	first strand
Strand 2	C	199	211	anti-parallel
Strand 3	C	266	275	anti-parallel
Strand 4	C	281	288	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	299	first strand
Strand 2	C	321	323	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	305	first strand
Strand 2	C	311	314	anti-parallel
Strand 3	D	30	32	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	172	first strand
Strand 2	D	184	193	anti-parallel
Strand 3	D	241	246	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	172	first strand
Strand 2	D	184	193	anti-parallel
Strand 3	D	176	181	anti-parallel
Strand 4	D	293	295	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	223	first strand
Strand 2	D	199	211	anti-parallel
Strand 3	D	234	237	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	223	first strand
Strand 2	D	199	211	anti-parallel
Strand 3	D	266	275	anti-parallel
Strand 4	D	281	288	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	299	first strand
Strand 2	D	321	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PR6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PR6