Analysis of interatomic Contacts of Structural Units in PDB entry:
9PR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PR8 entry

There are 3 chains in PDB entry 9PR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	ARG 551
B	SER 7	ARG 551
C	GLU 2	LEU 308

There are 56 helices in PDB entry 9PR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	24	Right-handed alpha
Helix 2	AA2	A	52	56	Right-handed alpha
Helix 3	AA3	A	119	123	Right-handed 310
Helix 4	AA4	A	155	165	Right-handed alpha
Helix 5	AA5	A	175	186	Right-handed alpha
Helix 6	AA6	A	217	234	Right-handed alpha
Helix 7	AA7	A	256	264	Right-handed alpha
Helix 8	AA8	A	421	426	Right-handed alpha
Helix 9	AA9	A	481	501	Right-handed alpha
Helix 10	AB1	A	506	510	Right-handed 310
Helix 11	AB2	A	511	522	Right-handed alpha
Helix 12	AB3	A	542	551	Right-handed alpha
Helix 13	AB4	B	15	23	Right-handed alpha
Helix 14	AB5	B	50	56	Right-handed alpha
Helix 15	AB6	B	90	94	Right-handed 310
Helix 16	AB7	B	119	123	Right-handed 310
Helix 17	AB8	B	155	164	Right-handed alpha
Helix 18	AB9	B	175	186	Right-handed alpha
Helix 19	AC1	B	217	234	Right-handed alpha
Helix 20	AC2	B	401	405	Right-handed 310
Helix 21	AC3	B	421	426	Right-handed alpha
Helix 22	AC4	B	481	501	Right-handed alpha
Helix 23	AC5	B	506	510	Right-handed 310
Helix 24	AC6	B	511	522	Right-handed alpha
Helix 25	AC7	B	542	551	Right-handed alpha
Helix 26	AC8	C	12	21	Right-handed alpha
Helix 27	AC9	C	77	81	Right-handed alpha
Helix 28	AD1	C	83	88	Right-handed alpha
Helix 29	AD2	C	112	116	Right-handed 310
Helix 30	AD3	C	149	159	Right-handed alpha
Helix 31	AD4	C	169	179	Right-handed alpha
Helix 32	AD5	C	185	189	Right-handed 310
Helix 33	AD6	C	218	236	Right-handed alpha
Helix 34	AD7	C	256	261	Right-handed 310
Helix 35	AD8	C	403	407	Right-handed 310
Helix 36	AD9	C	423	427	Right-handed 310
Helix 37	AE1	C	483	505	Right-handed alpha
Helix 38	AE2	C	509	513	Right-handed 310
Helix 39	AE3	C	514	526	Right-handed alpha
Helix 40	AE4	C	545	557	Right-handed alpha
Helix 41	AE5	D	12	21	Right-handed alpha
Helix 42	AE6	D	43	49	Right-handed alpha
Helix 43	AE7	D	77	82	Right-handed alpha
Helix 44	AE8	D	83	89	Right-handed alpha
Helix 45	AE9	D	112	116	Right-handed 310
Helix 46	AF1	D	149	159	Right-handed alpha
Helix 47	AF2	D	169	179	Right-handed alpha
Helix 48	AF3	D	218	236	Right-handed alpha
Helix 49	AF4	D	256	261	Right-handed 310
Helix 50	AF5	D	262	266	Right-handed 310
Helix 51	AF6	D	403	407	Right-handed 310
Helix 52	AF7	D	423	427	Right-handed 310
Helix 53	AF8	D	483	506	Right-handed alpha
Helix 54	AF9	D	509	513	Right-handed 310
Helix 55	AG1	D	514	526	Right-handed alpha
Helix 56	AG2	D	545	556	Right-handed alpha

There are 27 sheets in PDB entry 9PR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	8	13	anti-parallel
Strand 4	A	59	63	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	214	216	anti-parallel
Strand 3	A	67	70	anti-parallel
Strand 4	A	244	245	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	475	479	anti-parallel
Strand 3	A	467	471	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	202	207	parallel
Strand 4	A	107	112	parallel
Strand 5	A	238	242	parallel
Strand 6	A	267	272	parallel
Strand 7	A	430	435	parallel
Strand 8	A	460	463	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	286	first strand
Strand 2	A	394	398	anti-parallel
Strand 3	A	308	313	anti-parallel
Strand 4	A	368	373	anti-parallel
Strand 5	A	353	358	anti-parallel
Strand 6	A	340	343	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	299	first strand
Strand 2	A	380	387	anti-parallel
Strand 3	A	319	324	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	37	41	anti-parallel
Strand 3	B	8	13	anti-parallel
Strand 4	B	59	64	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	67	70	anti-parallel
Strand 3	B	244	245	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	475	480	anti-parallel
Strand 3	B	467	471	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	202	207	parallel
Strand 3	B	131	136	parallel
Strand 4	B	152	154	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	202	207	parallel
Strand 3	B	107	109	parallel
Strand 4	B	238	242	parallel
Strand 5	B	268	272	parallel
Strand 6	B	430	435	parallel
Strand 7	B	460	463	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	286	first strand
Strand 2	B	394	398	anti-parallel
Strand 3	B	307	313	anti-parallel
Strand 4	B	368	373	anti-parallel
Strand 5	B	353	358	anti-parallel
Strand 6	B	340	341	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	318	324	anti-parallel
Strand 3	B	382	389	anti-parallel
Strand 4	B	294	299	anti-parallel
Strand 5	B	410	411	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	32	37	anti-parallel
Strand 3	C	3	9	anti-parallel
Strand 4	C	52	57	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	206	first strand
Strand 2	C	214	217	anti-parallel
Strand 3	C	60	63	anti-parallel
Strand 4	C	245	246	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	478	482	anti-parallel
Strand 3	C	467	472	anti-parallel
Strand 4	C	75	76	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	196	201	parallel
Strand 4	C	100	105	parallel
Strand 5	C	239	242	parallel
Strand 6	C	269	272	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	288	first strand
Strand 2	C	396	400	anti-parallel
Strand 3	C	307	314	anti-parallel
Strand 4	C	370	376	anti-parallel
Strand 5	C	353	358	anti-parallel
Strand 6	C	343	348	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	320	first strand
Strand 2	C	381	391	anti-parallel
Strand 3	C	323	325	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	320	first strand
Strand 2	C	381	391	anti-parallel
Strand 3	C	295	302	anti-parallel
Strand 4	C	412	413	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	437	first strand
Strand 2	C	464	465	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	37	first strand
Strand 2	D	3	9	anti-parallel
Strand 3	D	52	57	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	206	first strand
Strand 2	D	214	217	anti-parallel
Strand 3	D	60	63	anti-parallel
Strand 4	D	245	246	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	478	482	anti-parallel
Strand 3	D	467	472	anti-parallel
Strand 4	D	75	76	parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	124	128	anti-parallel
Strand 3	D	196	201	parallel
Strand 4	D	100	105	parallel
Strand 5	D	239	243	parallel
Strand 6	D	269	274	parallel
Strand 7	D	431	437	parallel
Strand 8	D	462	465	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	288	first strand
Strand 2	D	396	400	anti-parallel
Strand 3	D	307	314	anti-parallel
Strand 4	D	370	376	anti-parallel
Strand 5	D	353	360	anti-parallel
Strand 6	D	344	348	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	325	first strand
Strand 2	D	381	391	anti-parallel
Strand 3	D	295	302	anti-parallel
Strand 4	D	412	413	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PR8