Analysis of interatomic Contacts of Structural Units in PDB entry:
9PR9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PR9 entry

There are 3 chains in PDB entry 9PR9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	HIS 556
B	SER 7	ARG 551
C	LEU 6	GLU 304

There are 43 helices in PDB entry 9PR9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	24	Right-handed alpha
Helix 2	AA2	A	46	54	Right-handed alpha
Helix 3	AA3	A	119	123	Right-handed 310
Helix 4	AA4	A	155	165	Right-handed alpha
Helix 5	AA5	A	175	186	Right-handed alpha
Helix 6	AA6	A	217	235	Right-handed alpha
Helix 7	AA7	A	421	426	Right-handed alpha
Helix 8	AA8	A	481	501	Right-handed alpha
Helix 9	AA9	A	506	510	Right-handed 310
Helix 10	AB1	A	511	522	Right-handed alpha
Helix 11	AB2	A	542	552	Right-handed alpha
Helix 12	AB3	B	119	123	Right-handed 310
Helix 13	AB4	B	155	164	Right-handed alpha
Helix 14	AB5	B	175	186	Right-handed alpha
Helix 15	AB6	B	217	235	Right-handed alpha
Helix 16	AB7	B	325	329	Right-handed 310
Helix 17	AB8	B	421	426	Right-handed alpha
Helix 18	AB9	B	481	501	Right-handed alpha
Helix 19	AC1	B	511	522	Right-handed alpha
Helix 20	AC2	B	542	551	Right-handed alpha
Helix 21	AC3	C	16	24	Right-handed alpha
Helix 22	AC4	C	46	54	Right-handed alpha
Helix 23	AC5	C	89	96	Right-handed alpha
Helix 24	AC6	C	119	123	Right-handed 310
Helix 25	AC7	C	155	164	Right-handed alpha
Helix 26	AC8	C	175	186	Right-handed alpha
Helix 27	AC9	C	217	235	Right-handed alpha
Helix 28	AD1	C	421	426	Right-handed alpha
Helix 29	AD2	C	481	501	Right-handed alpha
Helix 30	AD3	C	506	510	Right-handed 310
Helix 31	AD4	C	511	522	Right-handed alpha
Helix 32	AD5	C	542	552	Right-handed alpha
Helix 33	AD6	D	119	123	Right-handed 310
Helix 34	AD7	D	155	165	Right-handed alpha
Helix 35	AD8	D	175	186	Right-handed alpha
Helix 36	AD9	D	217	235	Right-handed alpha
Helix 37	AE1	D	333	337	Right-handed 310
Helix 38	AE2	D	401	405	Right-handed 310
Helix 39	AE3	D	421	426	Right-handed alpha
Helix 40	AE4	D	481	501	Right-handed alpha
Helix 41	AE5	D	506	510	Right-handed 310
Helix 42	AE6	D	511	522	Right-handed alpha
Helix 43	AE7	D	542	551	Right-handed alpha

There are 27 sheets in PDB entry 9PR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	37	40	anti-parallel
Strand 3	A	9	13	anti-parallel
Strand 4	A	59	63	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	214	216	anti-parallel
Strand 3	A	67	70	anti-parallel
Strand 4	A	244	245	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	475	480	anti-parallel
Strand 3	A	465	471	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	202	207	parallel
Strand 4	A	107	112	parallel
Strand 5	A	238	242	parallel
Strand 6	A	267	272	parallel
Strand 7	A	430	436	parallel
Strand 8	A	441	442	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	202	207	parallel
Strand 4	A	107	112	parallel
Strand 5	A	238	242	parallel
Strand 6	A	267	272	parallel
Strand 7	A	430	436	parallel
Strand 8	A	460	463	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	286	first strand
Strand 2	A	394	398	anti-parallel
Strand 3	A	306	313	anti-parallel
Strand 4	A	368	374	anti-parallel
Strand 5	A	351	358	anti-parallel
Strand 6	A	339	346	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	324	first strand
Strand 2	A	379	389	anti-parallel
Strand 3	A	293	300	anti-parallel
Strand 4	A	410	411	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	38	39	anti-parallel
Strand 3	B	9	11	anti-parallel
Strand 4	B	62	64	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	214	216	anti-parallel
Strand 3	B	67	70	anti-parallel
Strand 4	B	244	245	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	475	480	anti-parallel
Strand 3	B	465	471	anti-parallel
Strand 4	B	82	83	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	202	207	parallel
Strand 4	B	107	112	parallel
Strand 5	B	238	242	parallel
Strand 6	B	267	272	parallel
Strand 7	B	430	436	parallel
Strand 8	B	441	442	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	202	207	parallel
Strand 4	B	107	112	parallel
Strand 5	B	238	242	parallel
Strand 6	B	267	272	parallel
Strand 7	B	430	436	parallel
Strand 8	B	461	463	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	286	first strand
Strand 2	B	394	398	anti-parallel
Strand 3	B	306	313	anti-parallel
Strand 4	B	367	374	anti-parallel
Strand 5	B	352	358	anti-parallel
Strand 6	B	341	345	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	324	first strand
Strand 2	B	379	389	anti-parallel
Strand 3	B	293	300	anti-parallel
Strand 4	B	410	411	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	37	41	anti-parallel
Strand 3	C	8	13	anti-parallel
Strand 4	C	59	64	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	214	216	anti-parallel
Strand 3	C	67	70	anti-parallel
Strand 4	C	244	245	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	76	first strand
Strand 2	C	475	480	anti-parallel
Strand 3	C	465	471	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	202	207	parallel
Strand 4	C	107	112	parallel
Strand 5	C	238	242	parallel
Strand 6	C	267	272	parallel
Strand 7	C	430	435	parallel
Strand 8	C	461	463	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	286	first strand
Strand 2	C	394	398	anti-parallel
Strand 3	C	306	313	anti-parallel
Strand 4	C	368	374	anti-parallel
Strand 5	C	352	358	anti-parallel
Strand 6	C	339	343	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	324	first strand
Strand 2	C	379	389	anti-parallel
Strand 3	C	293	300	anti-parallel
Strand 4	C	409	411	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	9	12	anti-parallel
Strand 3	D	62	64	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	214	216	anti-parallel
Strand 3	D	67	70	anti-parallel
Strand 4	D	244	245	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	75	first strand
Strand 2	D	475	480	anti-parallel
Strand 3	D	465	471	anti-parallel
Strand 4	D	82	83	parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	202	207	parallel
Strand 4	D	107	112	parallel
Strand 5	D	238	242	parallel
Strand 6	D	267	272	parallel
Strand 7	D	430	436	parallel
Strand 8	D	441	442	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	202	207	parallel
Strand 4	D	107	112	parallel
Strand 5	D	238	242	parallel
Strand 6	D	267	272	parallel
Strand 7	D	430	436	parallel
Strand 8	D	460	463	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	286	first strand
Strand 2	D	394	398	anti-parallel
Strand 3	D	307	313	anti-parallel
Strand 4	D	367	373	anti-parallel
Strand 5	D	351	358	anti-parallel
Strand 6	D	341	346	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	324	first strand
Strand 2	D	379	387	anti-parallel
Strand 3	D	294	300	anti-parallel
Strand 4	D	410	411	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PR9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PR9