Analysis of interatomic Contacts of Structural Units in PDB entry:
9PRW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PRW entry

There are 4 chains in PDB entry 9PRW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 473	VAL 912
B	ILE 49	PHE 378
C	GLY 34	LEU 382
D	GLU 283	VAL 912

There are 69 helices in PDB entry 9PRW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	475	485	Right-handed alpha
Helix 2	AA2	A	489	493	Right-handed 310
Helix 3	AA3	A	515	523	Right-handed alpha
Helix 4	AA4	A	559	566	Right-handed alpha
Helix 5	AA5	A	571	578	Right-handed alpha
Helix 6	AA6	A	600	611	Right-handed alpha
Helix 7	AA7	A	627	631	Right-handed 310
Helix 8	AA8	A	644	654	Right-handed alpha
Helix 9	AA9	A	666	676	Right-handed alpha
Helix 10	AB1	A	686	690	Right-handed 310
Helix 11	AB2	A	691	699	Right-handed alpha
Helix 12	AB3	A	728	742	Right-handed alpha
Helix 13	AB4	A	762	774	Right-handed alpha
Helix 14	AB5	A	783	785	Right-handed 310
Helix 15	AB6	A	835	839	Right-handed 310
Helix 16	AB7	A	842	847	Right-handed alpha
Helix 17	AB8	A	860	868	Right-handed alpha
Helix 18	AB9	A	881	890	Right-handed alpha
Helix 19	AC1	A	894	909	Right-handed alpha
Helix 20	AC2	B	73	83	Right-handed alpha
Helix 21	AC3	B	118	125	Right-handed alpha
Helix 22	AC4	B	129	137	Right-handed alpha
Helix 23	AC5	B	159	172	Right-handed alpha
Helix 24	AC6	B	199	206	Right-handed alpha
Helix 25	AC7	B	223	227	Right-handed 310
Helix 26	AC8	B	228	236	Right-handed alpha
Helix 27	AC9	B	256	270	Right-handed alpha
Helix 28	AD1	B	291	303	Right-handed alpha
Helix 29	AD2	B	330	334	Right-handed 310
Helix 30	AD3	B	339	353	Right-handed alpha
Helix 31	AD4	B	369	374	Right-handed 310
Helix 32	AD5	C	37	44	Right-handed alpha
Helix 33	AD6	C	73	83	Right-handed alpha
Helix 34	AD7	C	118	126	Right-handed alpha
Helix 35	AD8	C	129	137	Right-handed alpha
Helix 36	AD9	C	159	171	Right-handed alpha
Helix 37	AE1	C	183	187	Right-handed 310
Helix 38	AE2	C	199	206	Right-handed alpha
Helix 39	AE3	C	214	216	Right-handed 310
Helix 40	AE4	C	228	236	Right-handed alpha
Helix 41	AE5	C	257	270	Right-handed alpha
Helix 42	AE6	C	291	303	Right-handed alpha
Helix 43	AE7	C	339	353	Right-handed alpha
Helix 44	AE8	C	360	366	Right-handed alpha
Helix 45	AE9	C	367	374	Right-handed 310
Helix 46	AF1	D	340	342	Right-handed 310
Helix 47	AF2	D	355	362	Right-handed alpha
Helix 48	AF3	D	362	381	Right-handed alpha
Helix 49	AF4	D	395	413	Right-handed alpha
Helix 50	AF5	D	418	423	Right-handed 310
Helix 51	AF6	D	474	484	Right-handed alpha
Helix 52	AF7	D	489	493	Right-handed 310
Helix 53	AF8	D	514	524	Right-handed alpha
Helix 54	AF9	D	560	567	Right-handed alpha
Helix 55	AG1	D	570	578	Right-handed alpha
Helix 56	AG2	D	600	612	Right-handed alpha
Helix 57	AG3	D	627	631	Right-handed 310
Helix 58	AG4	D	644	653	Right-handed alpha
Helix 59	AG5	D	666	677	Right-handed alpha
Helix 60	AG6	D	691	699	Right-handed alpha
Helix 61	AG7	D	725	727	Right-handed 310
Helix 62	AG8	D	728	742	Right-handed alpha
Helix 63	AG9	D	762	773	Right-handed alpha
Helix 64	AH1	D	781	785	Right-handed 310
Helix 65	AH2	D	815	819	Right-handed 310
Helix 66	AH3	D	835	839	Right-handed 310
Helix 67	AH4	D	860	868	Right-handed alpha
Helix 68	AH5	D	881	890	Right-handed alpha
Helix 69	AH6	D	894	909	Right-handed alpha

There are 14 sheets in PDB entry 9PRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	505	first strand
Strand 2	A	512	514	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	595	596	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	683	first strand
Strand 2	A	657	663	parallel
Strand 3	A	634	639	parallel
Strand 4	A	703	706	parallel
Strand 5	A	752	758	parallel
Strand 6	A	791	796	anti-parallel
Strand 7	A	778	781	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	825	first strand
Strand 2	A	850	852	anti-parallel
Strand 3	A	855	857	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	154	155	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	192	195	parallel
Strand 3	B	240	244	parallel
Strand 4	B	281	286	parallel
Strand 5	B	316	325	anti-parallel
Strand 6	B	307	313	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	71	72	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	151	first strand
Strand 2	C	154	155	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	221	first strand
Strand 2	C	192	195	parallel
Strand 3	C	240	244	parallel
Strand 4	C	281	286	parallel
Strand 5	C	316	325	anti-parallel
Strand 6	C	307	313	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	339	first strand
Strand 2	D	326	329	anti-parallel
Strand 3	D	306	310	anti-parallel
Strand 4	D	295	298	anti-parallel
Strand 5	D	344	345	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	504	505	first strand
Strand 2	D	512	513	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	546	547	first strand
Strand 2	D	558	559	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	657	663	first strand
Strand 2	D	634	639	parallel
Strand 3	D	703	707	parallel
Strand 4	D	753	758	parallel
Strand 5	D	792	794	anti-parallel
Strand 6	D	778	780	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	824	825	first strand
Strand 2	D	850	851	anti-parallel
Strand 3	D	856	857	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PRW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PRW