Analysis of interatomic Contacts of Structural Units in PDB entry:
9PS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PS8 entry

There are 3 chains in PDB entry 9PS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 50LEU 582
B
 MET 50LEU 582
C
 MET 50LEU 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 9PS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 59Right-handed alpha
Helix 2
AA2
A
60 71Right-handed alpha
Helix 3
AA3
A
72 75Right-handed 310
Helix 4
AA4
A
83 89Right-handed alpha
Helix 5
AA5
A
95 121Right-handed alpha
Helix 6
AA6
A
121 133Right-handed alpha
Helix 7
AA7
A
136 162Right-handed alpha
Helix 8
AA8
A
163 165Right-handed 310
Helix 9
AA9
A
166 193Right-handed alpha
Helix 10
AB1
A
198 223Right-handed alpha
Helix 11
AB2
A
227 254Right-handed alpha
Helix 12
AB3
A
301 310Right-handed alpha
Helix 13
AB4
A
313 320Right-handed alpha
Helix 14
AB5
A
321 342Right-handed alpha
Helix 15
AB6
A
355 374Right-handed alpha
Helix 16
AB7
A
377 382Right-handed alpha
Helix 17
AB8
A
390 409Right-handed alpha
Helix 18
AB9
A
417 452Right-handed alpha
Helix 19
AC1
A
454 482Right-handed alpha
Helix 20
AC2
A
483 515Right-handed alpha
Helix 21
AC3
A
526 549Right-handed alpha
Helix 22
AC4
A
554 577Right-handed alpha
Helix 23
AC5
B
52 57Right-handed 310
Helix 24
AC6
B
63 71Right-handed alpha
Helix 25
AC7
B
72 75Right-handed 310
Helix 26
AC8
B
82 90Right-handed alpha
Helix 27
AC9
B
92 94Right-handed 310
Helix 28
AD1
B
95 121Right-handed alpha
Helix 29
AD2
B
121 133Right-handed alpha
Helix 30
AD3
B
136 163Right-handed alpha
Helix 31
AD4
B
166 193Right-handed alpha
Helix 32
AD5
B
198 223Right-handed alpha
Helix 33
AD6
B
227 254Right-handed alpha
Helix 34
AD7
B
301 309Right-handed alpha
Helix 35
AD8
B
313 319Right-handed alpha
Helix 36
AD9
B
321 342Right-handed alpha
Helix 37
AE1
B
355 374Right-handed alpha
Helix 38
AE2
B
377 382Right-handed alpha
Helix 39
AE3
B
390 409Right-handed alpha
Helix 40
AE4
B
417 452Right-handed alpha
Helix 41
AE5
B
454 482Right-handed alpha
Helix 42
AE6
B
483 515Right-handed alpha
Helix 43
AE7
B
525 549Right-handed alpha
Helix 44
AE8
B
554 577Right-handed alpha
Helix 45
AE9
C
52 59Right-handed 310
Helix 46
AF1
C
60 62Right-handed 310
Helix 47
AF2
C
63 71Right-handed alpha
Helix 48
AF3
C
72 75Right-handed 310
Helix 49
AF4
C
82 89Right-handed alpha
Helix 50
AF5
C
92 94Right-handed 310
Helix 51
AF6
C
95 121Right-handed alpha
Helix 52
AF7
C
121 133Right-handed alpha
Helix 53
AF8
C
136 162Right-handed alpha
Helix 54
AF9
C
163 165Right-handed 310
Helix 55
AG1
C
166 193Right-handed alpha
Helix 56
AG2
C
198 223Right-handed alpha
Helix 57
AG3
C
227 254Right-handed alpha
Helix 58
AG4
C
301 309Right-handed alpha
Helix 59
AG5
C
313 320Right-handed alpha
Helix 60
AG6
C
321 342Right-handed alpha
Helix 61
AG7
C
355 374Right-handed alpha
Helix 62
AG8
C
377 382Right-handed alpha
Helix 63
AG9
C
385 387Right-handed 310
Helix 64
AH1
C
390 409Right-handed alpha
Helix 65
AH2
C
417 452Right-handed alpha
Helix 66
AH3
C
454 481Right-handed alpha
Helix 67
AH4
C
483 515Right-handed alpha
Helix 68
AH5
C
526 549Right-handed alpha
Helix 69
AH6
C
554 577Right-handed alpha
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There are 9 sheets in PDB entry 9PS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
552 553anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
518 520anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 384first strand
Strand 2
A
388 389anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 196first strand
Strand 2
B
552 553anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
518 520anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 384first strand
Strand 2
B
388 389anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 196first strand
Strand 2
C
552 553anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 226first strand
Strand 2
C
518 520anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
383 384first strand
Strand 2
C
388 389anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il