Analysis of interatomic Contacts of Structural Units in PDB entry:
9PSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PSJ entry

There is 1 chain in PDB entry 9PSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 144PHE 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9PSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
144 156Right-handed alpha
Helix 2
AA2
A
156 172Right-handed alpha
Helix 3
AA3
A
196 200Right-handed 310
Helix 4
AA4
A
232 235Right-handed 310
Helix 5
AA5
A
298 306Right-handed alpha
Helix 6
AA6
A
311 326Right-handed alpha
Helix 7
AA7
A
340 348Right-handed alpha
Helix 8
AA8
A
356 363Right-handed alpha
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There are 4 sheets in PDB entry 9PSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 275first strand
Strand 2
A
206 215anti-parallel
Strand 3
A
176 191anti-parallel
Strand 4
A
385 398anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 259first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
280 288anti-parallel
Strand 4
A
371 377anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
295 297anti-parallel
Strand 3
A
365 366anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
351 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il