Analysis of interatomic Contacts of Structural Units in PDB entry:
9PTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PTD entry

There are 5 chains in PDB entry 9PTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 136SER 498
B
 THR 136MET 499
C
 ASN 143LEU 496
D
 VAL 140MET 499
E
 TYR 223SER 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are129 helices in PDB entry 9PTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 143Right-handed alpha
Helix 2
AA2
A
145 151Right-handed alpha
Helix 3
AA3
A
152 162Right-handed alpha
Helix 4
AA4
A
169 181Right-handed alpha
Helix 5
AA5
A
182 191Right-handed alpha
Helix 6
AA6
A
194 205Right-handed alpha
Helix 7
AA7
A
207 221Right-handed alpha
Helix 8
AA8
A
221 228Right-handed alpha
Helix 9
AA9
A
230 242Right-handed alpha
Helix 10
AB1
A
243 253Right-handed alpha
Helix 11
AB2
A
258 264Right-handed alpha
Helix 12
AB3
A
267 279Right-handed alpha
Helix 13
AB4
A
280 283Right-handed 310
Helix 14
AB5
A
284 292Right-handed alpha
Helix 15
AB6
A
293 302Right-handed alpha
Helix 16
AB7
A
305 319Right-handed alpha
Helix 17
AB8
A
328 343Right-handed alpha
Helix 18
AB9
A
343 349Right-handed alpha
Helix 19
AC1
A
353 363Right-handed alpha
Helix 20
AC2
A
364 366Right-handed 310
Helix 21
AC3
A
367 378Right-handed alpha
Helix 22
AC4
A
382 388Right-handed alpha
Helix 23
AC5
A
391 403Right-handed alpha
Helix 24
AC6
A
404 416Right-handed alpha
Helix 25
AC7
A
428 435Right-handed alpha
Helix 26
AC8
A
438 454Right-handed alpha
Helix 27
AC9
A
458 479Right-handed alpha
Helix 28
AD1
A
479 484Right-handed alpha
Helix 29
AD2
A
486 498Right-handed alpha
Helix 30
AD3
B
137 144Right-handed alpha
Helix 31
AD4
B
145 151Right-handed alpha
Helix 32
AD5
B
152 162Right-handed alpha
Helix 33
AD6
B
169 181Right-handed alpha
Helix 34
AD7
B
182 191Right-handed alpha
Helix 35
AD8
B
194 205Right-handed alpha
Helix 36
AD9
B
207 219Right-handed alpha
Helix 37
AE1
B
221 228Right-handed alpha
Helix 38
AE2
B
230 242Right-handed alpha
Helix 39
AE3
B
243 253Right-handed alpha
Helix 40
AE4
B
258 264Right-handed alpha
Helix 41
AE5
B
267 279Right-handed alpha
Helix 42
AE6
B
280 283Right-handed 310
Helix 43
AE7
B
284 292Right-handed alpha
Helix 44
AE8
B
293 302Right-handed alpha
Helix 45
AE9
B
305 319Right-handed alpha
Helix 46
AF1
B
327 342Right-handed alpha
Helix 47
AF2
B
343 349Right-handed alpha
Helix 48
AF3
B
352 363Right-handed alpha
Helix 49
AF4
B
367 378Right-handed alpha
Helix 50
AF5
B
382 388Right-handed alpha
Helix 51
AF6
B
391 403Right-handed alpha
Helix 52
AF7
B
404 418Right-handed alpha
Helix 53
AF8
B
428 436Right-handed alpha
Helix 54
AF9
B
438 454Right-handed alpha
Helix 55
AG1
B
458 479Right-handed alpha
Helix 56
AG2
B
479 484Right-handed alpha
Helix 57
AG3
B
486 499Right-handed alpha
Helix 58
AG4
C
145 151Right-handed alpha
Helix 59
AG5
C
152 162Right-handed alpha
Helix 60
AG6
C
169 180Right-handed alpha
Helix 61
AG7
C
182 191Right-handed alpha
Helix 62
AG8
C
194 205Right-handed alpha
Helix 63
AG9
C
207 219Right-handed alpha
Helix 64
AH1
C
222 228Right-handed alpha
Helix 65
AH2
C
230 242Right-handed alpha
Helix 66
AH3
C
243 254Right-handed alpha
Helix 67
AH4
C
258 264Right-handed alpha
Helix 68
AH5
C
267 279Right-handed alpha
Helix 69
AH6
C
280 283Right-handed 310
Helix 70
AH7
C
284 291Right-handed alpha
Helix 71
AH8
C
293 302Right-handed alpha
Helix 72
AH9
C
305 319Right-handed alpha
Helix 73
AI1
C
328 337Right-handed alpha
Helix 74
AI2
C
338 343Right-handed alpha
Helix 75
AI3
C
343 350Right-handed alpha
Helix 76
AI4
C
352 362Right-handed alpha
Helix 77
AI5
C
367 379Right-handed alpha
Helix 78
AI6
C
382 389Right-handed alpha
Helix 79
AI7
C
391 403Right-handed alpha
Helix 80
AI8
C
404 418Right-handed alpha
Helix 81
AI9
C
428 436Right-handed alpha
Helix 82
AJ1
C
438 455Right-handed alpha
Helix 83
AJ2
C
458 479Right-handed alpha
Helix 84
AJ3
C
479 484Right-handed alpha
Helix 85
AJ4
C
486 495Right-handed alpha
Helix 86
AJ5
D
152 162Right-handed alpha
Helix 87
AJ6
D
169 181Right-handed alpha
Helix 88
AJ7
D
182 191Right-handed alpha
Helix 89
AJ8
D
195 205Right-handed alpha
Helix 90
AJ9
D
207 221Right-handed alpha
Helix 91
AK1
D
221 228Right-handed alpha
Helix 92
AK2
D
228 242Right-handed alpha
Helix 93
AK3
D
243 254Right-handed alpha
Helix 94
AK4
D
258 264Right-handed alpha
Helix 95
AK5
D
268 279Right-handed alpha
Helix 96
AK6
D
284 292Right-handed alpha
Helix 97
AK7
D
293 302Right-handed alpha
Helix 98
AK8
D
305 318Right-handed alpha
Helix 99
AK9
D
328 343Right-handed alpha
Helix 100
AL1
D
343 350Right-handed alpha
Helix 101
AL2
D
352 362Right-handed alpha
Helix 102
AL3
D
369 377Right-handed alpha
Helix 103
AL4
D
382 388Right-handed alpha
Helix 104
AL5
D
391 402Right-handed alpha
Helix 105
AL6
D
404 416Right-handed alpha
Helix 106
AL7
D
428 435Right-handed alpha
Helix 107
AL8
D
438 453Right-handed alpha
Helix 108
AL9
D
458 479Right-handed alpha
Helix 109
AM1
D
479 485Right-handed alpha
Helix 110
AM2
D
486 497Right-handed alpha
Helix 111
AM3
E
231 239Right-handed alpha
Helix 112
AM4
E
248 252Right-handed 310
Helix 113
AM5
E
259 264Right-handed alpha
Helix 114
AM6
E
267 277Right-handed alpha
Helix 115
AM7
E
281 293Right-handed alpha
Helix 116
AM8
E
293 302Right-handed alpha
Helix 117
AM9
E
305 318Right-handed alpha
Helix 118
AN1
E
335 343Right-handed alpha
Helix 119
AN2
E
343 349Right-handed alpha
Helix 120
AN3
E
352 363Right-handed alpha
Helix 121
AN4
E
369 378Right-handed alpha
Helix 122
AN5
E
382 388Right-handed alpha
Helix 123
AN6
E
391 402Right-handed alpha
Helix 124
AN7
E
404 418Right-handed alpha
Helix 125
AN8
E
428 435Right-handed alpha
Helix 126
AN9
E
438 452Right-handed alpha
Helix 127
AO1
E
458 479Right-handed alpha
Helix 128
AO2
E
479 484Right-handed alpha
Helix 129
AO3
E
486 498Right-handed alpha
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There are no sheets in PDB entry 9PTD
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