Analysis of interatomic Contacts of Structural Units in PDB entry:
9PUV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PUV entry

There are 4 chains in PDB entry 9PUV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 3	ASP 909
B	ASP 4	PRO 41
C	TYR 3	ASP 909
D	LEU 3	SER 42

There are 31 helices in PDB entry 9PUV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	24	Right-handed 310
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	132	137	Right-handed alpha
Helix 4	AA4	A	159	165	Right-handed 310
Helix 5	AA5	A	193	200	Right-handed 310
Helix 6	AA6	A	255	266	Right-handed alpha
Helix 7	AA7	A	315	318	Right-handed 310
Helix 8	AA8	A	323	329	Right-handed alpha
Helix 9	AA9	A	350	359	Right-handed alpha
Helix 10	AB1	A	435	446	Right-handed alpha
Helix 11	AB2	A	448	452	Right-handed 310
Helix 12	AB3	A	641	646	Right-handed alpha
Helix 13	AB4	A	865	872	Right-handed alpha
Helix 14	AB5	B	5	17	Right-handed alpha
Helix 15	AB6	B	23	37	Right-handed alpha
Helix 16	AB7	C	16	24	Right-handed 310
Helix 17	AB8	C	42	46	Right-handed 310
Helix 18	AB9	C	71	76	Right-handed alpha
Helix 19	AC1	C	160	165	Right-handed alpha
Helix 20	AC2	C	193	200	Right-handed 310
Helix 21	AC3	C	256	268	Right-handed alpha
Helix 22	AC4	C	315	318	Right-handed 310
Helix 23	AC5	C	323	329	Right-handed alpha
Helix 24	AC6	C	350	359	Right-handed alpha
Helix 25	AC7	C	435	446	Right-handed alpha
Helix 26	AC8	C	496	498	Right-handed 310
Helix 27	AC9	C	640	644	Right-handed 310
Helix 28	AD1	C	811	815	Right-handed 310
Helix 29	AD2	C	865	872	Right-handed alpha
Helix 30	AD3	D	4	16	Right-handed alpha
Helix 31	AD4	D	21	35	Right-handed alpha

There are 33 sheets in PDB entry 9PUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	14	first strand
Strand 2	A	26	38	parallel
Strand 3	A	56	57	parallel
Strand 4	A	81	82	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	14	first strand
Strand 2	A	26	38	parallel
Strand 3	A	61	66	parallel
Strand 4	A	91	96	parallel
Strand 5	A	116	122	parallel
Strand 6	A	144	148	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	179	180	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	236	237	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	252	254	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	294	first strand
Strand 2	A	301	303	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	335	337	parallel
Strand 3	A	363	364	parallel
Strand 4	A	387	388	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	340	342	parallel
Strand 3	A	368	371	parallel
Strand 4	A	398	403	parallel
Strand 5	A	425	429	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	480	first strand
Strand 2	A	485	489	anti-parallel
Strand 3	A	552	553	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	534	first strand
Strand 2	A	502	506	anti-parallel
Strand 3	A	563	571	anti-parallel
Strand 4	A	588	591	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	606	first strand
Strand 2	A	613	616	anti-parallel
Strand 3	A	769	772	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	636	637	first strand
Strand 2	A	780	788	anti-parallel
Strand 3	A	629	633	anti-parallel
Strand 4	A	761	764	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	636	637	first strand
Strand 2	A	780	788	anti-parallel
Strand 3	A	801	806	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	821	824	first strand
Strand 2	A	830	833	anti-parallel
Strand 3	A	874	876	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	864	first strand
Strand 2	A	844	853	anti-parallel
Strand 3	A	882	892	anti-parallel
Strand 4	A	895	896	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	864	first strand
Strand 2	A	844	853	anti-parallel
Strand 3	A	882	892	anti-parallel
Strand 4	A	903	907	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	9	first strand
Strand 2	C	28	30	parallel
Strand 3	C	56	57	parallel
Strand 4	C	81	82	parallel
Strand 5	C	111	112	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	33	38	parallel
Strand 3	C	61	66	parallel
Strand 4	C	91	96	parallel
Strand 5	C	116	122	parallel
Strand 6	C	144	148	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	179	180	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	184	first strand
Strand 2	C	187	188	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	216	first strand
Strand 2	C	225	228	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	233	first strand
Strand 2	C	236	238	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	248	first strand
Strand 2	C	252	255	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	295	first strand
Strand 2	C	300	303	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	335	337	parallel
Strand 3	C	363	364	parallel
Strand 4	C	387	388	parallel
Strand 5	C	420	421	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	368	371	parallel
Strand 3	C	398	403	parallel
Strand 4	C	425	429	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	480	first strand
Strand 2	C	485	486	anti-parallel
Strand 3	C	554	555	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	533	first strand
Strand 2	C	500	509	anti-parallel
Strand 3	C	563	572	anti-parallel
Strand 4	C	588	591	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	609	first strand
Strand 2	C	612	616	anti-parallel
Strand 3	C	769	772	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	762	765	first strand
Strand 2	C	629	633	anti-parallel
Strand 3	C	784	785	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	821	824	first strand
Strand 2	C	830	833	anti-parallel
Strand 3	C	873	876	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	859	864	first strand
Strand 2	C	844	853	anti-parallel
Strand 3	C	882	892	anti-parallel
Strand 4	C	895	899	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	859	864	first strand
Strand 2	C	844	853	anti-parallel
Strand 3	C	882	892	anti-parallel
Strand 4	C	903	907	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PUV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PUV