Analysis of interatomic Contacts of Structural Units in PDB entry:
9PUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PUW entry

There are 8 chains in PDB entry 9PUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 7	LEU 909
B	TYR 3	ASP 910
C	GLY 1	GLY 47
M	PHE 705	VAL 715
N	PHE 705	VAL 715
P	HIS 5	THR 27
Q	GLY 1	GLY 47
R	PHE 1	THR 27

There are 36 helices in PDB entry 9PUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	24	Right-handed 310
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	132	136	Right-handed 310
Helix 4	AA4	A	221	223	Right-handed 310
Helix 5	AA5	A	256	267	Right-handed alpha
Helix 6	AA6	A	314	318	Right-handed 310
Helix 7	AA7	A	323	329	Right-handed alpha
Helix 8	AA8	A	350	359	Right-handed alpha
Helix 9	AA9	A	435	446	Right-handed alpha
Helix 10	AB1	A	638	643	Right-handed alpha
Helix 11	AB2	A	863	870	Right-handed alpha
Helix 12	AB3	B	17	24	Right-handed 310
Helix 13	AB4	B	42	47	Right-handed alpha
Helix 14	AB5	B	132	137	Right-handed alpha
Helix 15	AB6	B	149	153	Right-handed alpha
Helix 16	AB7	B	193	197	Right-handed 310
Helix 17	AB8	B	221	223	Right-handed 310
Helix 18	AB9	B	255	267	Right-handed alpha
Helix 19	AC1	B	314	318	Right-handed 310
Helix 20	AC2	B	323	329	Right-handed alpha
Helix 21	AC3	B	351	359	Right-handed alpha
Helix 22	AC4	B	435	447	Right-handed alpha
Helix 23	AC5	B	639	644	Right-handed alpha
Helix 24	AC6	B	808	812	Right-handed 310
Helix 25	AC7	B	863	870	Right-handed alpha
Helix 26	AC8	C	2	7	Right-handed alpha
Helix 27	AC9	C	12	19	Right-handed alpha
Helix 28	AD1	C	24	28	Right-handed 310
Helix 29	AD2	C	32	45	Right-handed alpha
Helix 30	AD3	M	706	714	Right-handed alpha
Helix 31	AD4	N	706	714	Right-handed alpha
Helix 32	AD5	P	7	19	Right-handed alpha
Helix 33	AD6	Q	2	7	Right-handed alpha
Helix 34	AD7	Q	12	18	Right-handed alpha
Helix 35	AD8	Q	32	43	Right-handed alpha
Helix 36	AD9	R	8	19	Right-handed alpha

There are 32 sheets in PDB entry 9PUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	33	38	parallel
Strand 3	A	61	66	parallel
Strand 4	A	93	96	parallel
Strand 5	A	117	120	parallel
Strand 6	A	144	145	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	56	57	parallel
Strand 3	A	81	82	parallel
Strand 4	A	111	112	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	225	228	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	236	238	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	248	first strand
Strand 2	A	252	255	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	283	285	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	294	first strand
Strand 2	A	301	303	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	A	400	403	parallel
Strand 3	A	428	429	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	480	first strand
Strand 2	A	485	489	anti-parallel
Strand 3	A	551	553	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	534	first strand
Strand 2	A	500	509	anti-parallel
Strand 3	A	561	570	anti-parallel
Strand 4	A	586	589	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	604	first strand
Strand 2	A	610	616	anti-parallel
Strand 3	A	767	771	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	762	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	778	788	anti-parallel
Strand 4	A	794	795	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	762	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	778	788	anti-parallel
Strand 4	A	799	804	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	818	821	first strand
Strand 2	A	829	832	anti-parallel
Strand 3	A	872	873	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	862	first strand
Strand 2	A	842	851	anti-parallel
Strand 3	A	881	890	anti-parallel
Strand 4	A	901	904	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	9	first strand
Strand 2	B	28	30	parallel
Strand 3	B	56	57	parallel
Strand 4	B	81	82	parallel
Strand 5	B	111	112	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	32	38	parallel
Strand 3	B	60	66	parallel
Strand 4	B	93	96	parallel
Strand 5	B	117	122	parallel
Strand 6	B	144	148	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	225	228	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	236	238	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	248	first strand
Strand 2	B	252	254	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	302	303	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	312	first strand
Strand 2	B	335	336	parallel
Strand 3	B	363	364	parallel
Strand 4	B	387	388	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	340	342	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	369	first strand
Strand 2	B	400	403	parallel
Strand 3	B	428	429	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	485	489	anti-parallel
Strand 3	B	552	553	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	502	first strand
Strand 2	B	569	570	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	509	first strand
Strand 2	B	561	565	anti-parallel
Strand 3	B	586	589	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	607	first strand
Strand 2	B	610	616	anti-parallel
Strand 3	B	767	771	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	762	first strand
Strand 2	B	627	633	anti-parallel
Strand 3	B	778	788	anti-parallel
Strand 4	B	794	795	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	762	first strand
Strand 2	B	627	633	anti-parallel
Strand 3	B	778	788	anti-parallel
Strand 4	B	799	804	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	818	822	first strand
Strand 2	B	828	832	anti-parallel
Strand 3	B	872	874	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	862	first strand
Strand 2	B	844	851	anti-parallel
Strand 3	B	880	889	anti-parallel
Strand 4	B	901	905	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PUW