Analysis of interatomic Contacts of Structural Units in PDB entry:
9PV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PV1 entry

There are 2 chains in PDB entry 9PV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3CYS 307
B
 PRO -1GLY 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9PV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
33 49Right-handed alpha
Helix 3
AA3
A
70 78Right-handed alpha
Helix 4
AA4
A
79 91Right-handed alpha
Helix 5
AA5
A
159 165Right-handed alpha
Helix 6
AA6
A
165 180Right-handed alpha
Helix 7
AA7
A
185 195Right-handed alpha
Helix 8
AA8
A
199 208Right-handed alpha
Helix 9
AA9
A
257 265Right-handed alpha
Helix 10
AB1
A
265 272Right-handed alpha
Helix 11
AB2
A
278 282Right-handed 310
Helix 12
AB3
A
290 294Right-handed 310
Helix 13
AB4
A
299 302Right-handed 310
Helix 14
AB5
B
-1 3Right-handed 310
Helix 15
AB6
B
13 24Right-handed alpha
Helix 16
AB7
B
33 49Right-handed alpha
Helix 17
AB8
B
70 78Right-handed alpha
Helix 18
AB9
B
79 91Right-handed alpha
Helix 19
AC1
B
159 165Right-handed alpha
Helix 20
AC2
B
165 180Right-handed alpha
Helix 21
AC3
B
185 195Right-handed alpha
Helix 22
AC4
B
199 208Right-handed alpha
Helix 23
AC5
B
257 265Right-handed alpha
Helix 24
AC6
B
265 272Right-handed alpha
Helix 25
AC7
B
278 283Right-handed alpha
Helix 26
AC8
B
290 294Right-handed 310
Helix 27
AC9
B
299 302Right-handed 310
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There are 6 sheets in PDB entry 9PV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
130 136anti-parallel
Strand 4
A
241 251anti-parallel
Strand 5
A
94 105anti-parallel
Strand 6
A
61 63anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
130 136anti-parallel
Strand 4
A
241 251anti-parallel
Strand 5
A
94 105anti-parallel
Strand 6
A
304 305anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
229 231anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
220 224anti-parallel
Strand 3
B
130 136anti-parallel
Strand 4
B
241 251anti-parallel
Strand 5
B
94 105anti-parallel
Strand 6
B
61 63anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
220 224anti-parallel
Strand 3
B
130 136anti-parallel
Strand 4
B
241 251anti-parallel
Strand 5
B
94 105anti-parallel
Strand 6
B
304 305anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
229 231anti-parallel
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