Analysis of interatomic Contacts of Structural Units in PDB entry:
9PV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PV8 entry

There is 1 chain in PDB entry 9PV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8LYS 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9PV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 37Right-handed alpha
Helix 2
AA2
A
87 99Right-handed alpha
Helix 3
AA3
A
108 113Right-handed alpha
Helix 4
AA4
A
117 123Right-handed alpha
Helix 5
AA5
A
127 131Right-handed 310
Helix 6
AA6
A
151 156Right-handed alpha
Helix 7
AA7
A
157 162Right-handed 310
Helix 8
AA8
A
165 173Right-handed alpha
Helix 9
AA9
A
174 176Right-handed 310
Helix 10
AB1
A
209 213Right-handed 310
Helix 11
AB2
A
225 235Right-handed alpha
Helix 12
AB3
A
246 254Right-handed alpha
Helix 13
AB4
A
281 291Right-handed alpha
Helix 14
AB5
A
293 300Right-handed alpha
Helix 15
AB6
A
329 340Right-handed alpha
Helix 16
AB7
A
342 346Right-handed 310
Helix 17
AB8
A
358 377Right-handed alpha
Helix 18
AB9
A
386 397Right-handed alpha
Helix 19
AC1
A
413 418Right-handed alpha
Helix 20
AC2
A
419 428Right-handed 310
Helix 21
AC3
A
434 447Right-handed alpha
Helix 22
AC4
A
449 467Right-handed alpha
Helix 23
AC5
A
500 504Right-handed 310
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There are 5 sheets in PDB entry 9PV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 194first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
217 221anti-parallel
Strand 4
A
10 14parallel
Strand 5
A
240 242parallel
Strand 6
A
471 483anti-parallel
Strand 7
A
307 308anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 194first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
217 221anti-parallel
Strand 4
A
10 14parallel
Strand 5
A
240 242parallel
Strand 6
A
471 483anti-parallel
Strand 7
A
259 272anti-parallel
Strand 8
A
401 407anti-parallel
Strand 9
A
351 356parallel
Strand 10
A
380 385parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
53 55anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
69 74anti-parallel
Strand 3
A
140 144anti-parallel
Strand 4
A
133 137anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 489first strand
Strand 2
A
505 506anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il