Analysis of interatomic Contacts of Structural Units in PDB entry:
9PVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PVG entry

There are 6 chains in PDB entry 9PVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 61VAL 219
B
 ILE 63GLN 218
C
 PRO 55THR 222
E
 THR 227GLY 254
F
 THR 227GLY 254
D
 PRO 55GLU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9PVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 98Right-handed alpha
Helix 2
AA2
A
106 108Right-handed 310
Helix 3
AA3
A
202 218Right-handed alpha
Helix 4
AA4
B
84 98Right-handed alpha
Helix 5
AA5
B
106 108Right-handed 310
Helix 6
AA6
B
202 217Right-handed alpha
Helix 7
AA7
C
84 98Right-handed alpha
Helix 8
AA8
C
106 108Right-handed 310
Helix 9
AA9
C
202 220Right-handed alpha
Helix 10
AB1
D
84 98Right-handed alpha
Helix 11
AB2
D
106 108Right-handed 310
Helix 12
AB3
D
202 220Right-handed alpha
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There are 4 sheets in PDB entry 9PVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
119 124anti-parallel
Strand 3
A
110 115anti-parallel
Strand 4
A
63 76anti-parallel
Strand 5
A
193 200anti-parallel
Strand 6
A
150 158anti-parallel
Strand 7
A
139 147anti-parallel
Strand 8
E
246 249anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 135first strand
Strand 2
B
119 124anti-parallel
Strand 3
B
110 115anti-parallel
Strand 4
B
64 77anti-parallel
Strand 5
B
192 200anti-parallel
Strand 6
B
150 158anti-parallel
Strand 7
B
139 147anti-parallel
Strand 8
F
246 249anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 135first strand
Strand 2
C
119 124anti-parallel
Strand 3
C
110 115anti-parallel
Strand 4
C
63 76anti-parallel
Strand 5
C
193 200anti-parallel
Strand 6
C
150 158anti-parallel
Strand 7
C
139 147anti-parallel
Strand 8
F
228 230anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
228 230first strand
Strand 2
D
139 147anti-parallel
Strand 3
D
150 157anti-parallel
Strand 4
D
193 200anti-parallel
Strand 5
D
63 76anti-parallel
Strand 6
D
110 115anti-parallel
Strand 7
D
119 124anti-parallel
Strand 8
D
130 135anti-parallel
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