Analysis of interatomic Contacts of Structural Units in PDB entry:
9PVO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PVO entry

There are 4 chains in PDB entry 9PVO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 467	TRP 909
B	HIS 1	GLY 463
Q	GLY 1	ARG 46
R	PHE 1	THR 27

There are 23 helices in PDB entry 9PVO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	541	546	Right-handed alpha
Helix 2	AA2	A	638	643	Right-handed 310
Helix 3	AA3	A	706	714	Right-handed alpha
Helix 4	AA4	A	820	825	Right-handed 310
Helix 5	AA5	A	875	882	Right-handed alpha
Helix 6	AA6	B	19	24	Right-handed 310
Helix 7	AA7	B	42	47	Right-handed alpha
Helix 8	AA8	B	132	136	Right-handed 310
Helix 9	AA9	B	148	152	Right-handed 310
Helix 10	AB1	B	193	200	Right-handed 310
Helix 11	AB2	B	256	265	Right-handed alpha
Helix 12	AB3	B	314	318	Right-handed 310
Helix 13	AB4	B	323	328	Right-handed alpha
Helix 14	AB5	B	329	331	Right-handed 310
Helix 15	AB6	B	350	359	Right-handed alpha
Helix 16	AB7	B	378	382	Right-handed 310
Helix 17	AB8	B	435	447	Right-handed alpha
Helix 18	AB9	B	448	452	Right-handed 310
Helix 19	AC1	Q	2	6	Right-handed alpha
Helix 20	AC2	Q	12	18	Right-handed alpha
Helix 21	AC3	Q	32	45	Right-handed alpha
Helix 22	AC4	R	8	20	Right-handed alpha
Helix 23	AC5	R	21	23	Right-handed 310

There are 14 sheets in PDB entry 9PVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	479	first strand
Strand 2	A	484	489	anti-parallel
Strand 3	A	550	554	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	533	first strand
Strand 2	A	500	509	anti-parallel
Strand 3	A	561	570	anti-parallel
Strand 4	A	586	589	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	607	first strand
Strand 2	A	610	616	anti-parallel
Strand 3	A	779	782	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	775	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	790	796	anti-parallel
Strand 4	A	811	816	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	873	874	first strand
Strand 2	A	854	857	anti-parallel
Strand 3	A	900	902	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	26	29	parallel
Strand 3	B	56	57	parallel
Strand 4	B	81	82	parallel
Strand 5	B	111	112	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	33	36	parallel
Strand 3	B	61	64	parallel
Strand 4	B	93	96	parallel
Strand 5	B	117	120	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	225	228	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	236	238	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	248	first strand
Strand 2	B	252	255	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	280	first strand
Strand 2	B	283	285	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	302	303	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	340	342	parallel
Strand 3	B	368	371	parallel
Strand 4	B	400	403	parallel
Strand 5	B	428	429	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	363	364	parallel
Strand 3	B	387	388	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PVO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PVO