Analysis of interatomic Contacts of Structural Units in PDB entry:
9PVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PVP entry

There is 1 chain in PDB entry 9PVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28LYS 1742
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9PVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 42Right-handed alpha
Helix 2
AA2
A
43 45Right-handed 310
Helix 3
AA3
A
53 68Right-handed alpha
Helix 4
AA4
A
72 81Right-handed alpha
Helix 5
AA5
A
83 109Right-handed alpha
Helix 6
AA6
A
926 930Right-handed 310
Helix 7
AA7
A
948 952Right-handed 310
Helix 8
AA8
A
1217 1222Right-handed 310
Helix 9
AA9
A
1427 1431Right-handed 310
Helix 10
AB1
A
1489 1491Right-handed 310
Helix 11
AB2
A
1606 1610Right-handed 310
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There are 40 sheets in PDB entry 9PVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
162 165anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
138 145anti-parallel
Strand 3
A
173 181anti-parallel
Strand 4
A
187 189anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
138 145anti-parallel
Strand 3
A
173 181anti-parallel
Strand 4
A
196 197anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 217first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
257 261anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 253first strand
Strand 2
A
235 243anti-parallel
Strand 3
A
268 277anti-parallel
Strand 4
A
281 290anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 315first strand
Strand 2
A
302 307anti-parallel
Strand 3
A
552 558anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 341first strand
Strand 2
A
346 351anti-parallel
Strand 3
A
354 359anti-parallel
Strand 4
A
370 373anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 385first strand
Strand 2
A
390 395anti-parallel
Strand 3
A
398 403anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 427first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
440 445anti-parallel
Strand 4
A
457 461anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 471first strand
Strand 2
A
476 481anti-parallel
Strand 3
A
486 491anti-parallel
Strand 4
A
498 501anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 514first strand
Strand 2
A
519 522anti-parallel
Strand 3
A
527 530anti-parallel
Strand 4
A
535 538anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 578first strand
Strand 2
A
583 588anti-parallel
Strand 3
A
629 632anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 625first strand
Strand 2
A
605 611anti-parallel
Strand 3
A
640 648anti-parallel
Strand 4
A
653 656anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 625first strand
Strand 2
A
605 611anti-parallel
Strand 3
A
640 648anti-parallel
Strand 4
A
662 663anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
694 695first strand
Strand 2
A
681 686anti-parallel
Strand 3
A
673 678anti-parallel
Strand 4
A
924 925anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 708first strand
Strand 2
A
712 717anti-parallel
Strand 3
A
722 726anti-parallel
Strand 4
A
736 737anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 749first strand
Strand 2
A
755 758anti-parallel
Strand 3
A
764 769anti-parallel
Strand 4
A
775 780anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
785 791first strand
Strand 2
A
796 801anti-parallel
Strand 3
A
805 809anti-parallel
Strand 4
A
816 819anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
828 835first strand
Strand 2
A
840 846anti-parallel
Strand 3
A
851 857anti-parallel
Strand 4
A
869 870anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
879 887first strand
Strand 2
A
890 895anti-parallel
Strand 3
A
900 904anti-parallel
Strand 4
A
911 912anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
953 956first strand
Strand 2
A
960 964anti-parallel
Strand 3
A
998 1002anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
988 994first strand
Strand 2
A
977 983anti-parallel
Strand 3
A
1011 1018anti-parallel
Strand 4
A
1021 1022anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
988 994first strand
Strand 2
A
977 983anti-parallel
Strand 3
A
1011 1018anti-parallel
Strand 4
A
1026 1028anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1041 1049first strand
Strand 2
A
1059 1066anti-parallel
Strand 3
A
1108 1114anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1098 1102first strand
Strand 2
A
1077 1085anti-parallel
Strand 3
A
1119 1127anti-parallel
Strand 4
A
1132 1135anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1098 1102first strand
Strand 2
A
1077 1085anti-parallel
Strand 3
A
1119 1127anti-parallel
Strand 4
A
1139 1142anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1169 1175first strand
Strand 2
A
1159 1164anti-parallel
Strand 3
A
1151 1156anti-parallel
Strand 4
A
1422 1425anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1183 1185first strand
Strand 2
A
1191 1196anti-parallel
Strand 3
A
1199 1204anti-parallel
Strand 4
A
1210 1215anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1228first strand
Strand 2
A
1233 1239anti-parallel
Strand 3
A
1245 1251anti-parallel
Strand 4
A
1260 1261anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1270 1277first strand
Strand 2
A
1282 1289anti-parallel
Strand 3
A
1292 1299anti-parallel
Strand 4
A
1304 1307anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1331 1338first strand
Strand 2
A
1346 1351anti-parallel
Strand 3
A
1354 1358anti-parallel
Strand 4
A
1365 1370anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1378 1384first strand
Strand 2
A
1388 1394anti-parallel
Strand 3
A
1399 1405anti-parallel
Strand 4
A
1411 1416anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1449 1453first strand
Strand 2
A
1458 1461anti-parallel
Strand 3
A
1507 1510anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1499 1503first strand
Strand 2
A
1480 1487anti-parallel
Strand 3
A
1518 1526anti-parallel
Strand 4
A
1542 1545anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1557 1561first strand
Strand 2
A
1567 1571anti-parallel
Strand 3
A
1612 1615anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1596 1602first strand
Strand 2
A
1585 1590anti-parallel
Strand 3
A
1623 1631anti-parallel
Strand 4
A
1638 1640anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1596 1602first strand
Strand 2
A
1585 1590anti-parallel
Strand 3
A
1623 1631anti-parallel
Strand 4
A
1644 1647anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1656 1660first strand
Strand 2
A
1664 1669anti-parallel
Strand 3
A
1705 1710anti-parallel
Strand 4
A
1698 1699anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1693 1695first strand
Strand 2
A
1677 1686anti-parallel
Strand 3
A
1717 1726anti-parallel
Strand 4
A
1731 1733anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1693 1695first strand
Strand 2
A
1677 1686anti-parallel
Strand 3
A
1717 1726anti-parallel
Strand 4
A
1737 1740anti-parallel
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