Analysis of interatomic Contacts of Structural Units in PDB entry:
9PVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PVR entry

There are 2 chains in PDB entry 9PVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10ARG 260
B
 LEU 10ARG 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9PVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 39Right-handed alpha
Helix 2
AA2
A
49 63Right-handed alpha
Helix 3
AA3
A
76 78Right-handed 310
Helix 4
AA4
A
79 92Right-handed alpha
Helix 5
AA5
A
108 112Right-handed 310
Helix 6
AA6
A
113 125Right-handed alpha
Helix 7
AA7
A
125 143Right-handed alpha
Helix 8
AA8
A
152 156Right-handed 310
Helix 9
AA9
A
162 184Right-handed alpha
Helix 10
AB1
A
198 202Right-handed 310
Helix 11
AB2
A
210 219Right-handed alpha
Helix 12
AB3
A
227 230Right-handed 310
Helix 13
AB4
A
231 239Right-handed alpha
Helix 14
AB5
A
240 244Right-handed 310
Helix 15
AB6
A
256 260Right-handed 310
Helix 16
AB7
B
26 39Right-handed alpha
Helix 17
AB8
B
49 63Right-handed alpha
Helix 18
AB9
B
76 78Right-handed 310
Helix 19
AC1
B
79 91Right-handed alpha
Helix 20
AC2
B
108 112Right-handed 310
Helix 21
AC3
B
113 125Right-handed alpha
Helix 22
AC4
B
125 143Right-handed alpha
Helix 23
AC5
B
152 156Right-handed 310
Helix 24
AC6
B
162 184Right-handed alpha
Helix 25
AC7
B
211 219Right-handed alpha
Helix 26
AC8
B
227 230Right-handed 310
Helix 27
AC9
B
231 239Right-handed alpha
Helix 28
AD1
B
240 244Right-handed 310
Helix 29
AD2
B
256 260Right-handed 310
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There are 2 sheets in PDB entry 9PVR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
42 47parallel
Strand 3
A
18 22parallel
Strand 4
A
96 99parallel
Strand 5
A
145 150parallel
Strand 6
A
188 195parallel
Strand 7
A
250 253parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
42 47parallel
Strand 3
B
18 22parallel
Strand 4
B
96 99parallel
Strand 5
B
145 150parallel
Strand 6
B
188 195parallel
Strand 7
B
250 253parallel
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