Analysis of interatomic Contacts of Structural Units in PDB entry:
9PWQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PWQ entry

There are 2 chains in PDB entry 9PWQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 109	ASP 1650
B	GLU 271	HIS 483

There are 10 helices in PDB entry 9PWQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	926	930	Right-handed 310
Helix 2	AA2	A	948	952	Right-handed 310
Helix 3	AA3	A	1217	1220	Right-handed 310
Helix 4	AA4	A	1427	1431	Right-handed 310
Helix 5	AA5	A	1436	1440	Right-handed 310
Helix 6	AA6	A	1489	1491	Right-handed 310
Helix 7	AA7	A	1604	1610	Right-handed 310
Helix 8	AA8	B	380	382	Right-handed 310
Helix 9	AA9	B	399	403	Right-handed 310
Helix 10	AB1	B	442	447	Right-handed alpha

There are 44 sheets in PDB entry 9PWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	125	128	anti-parallel
Strand 3	A	162	165	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	138	144	anti-parallel
Strand 3	A	175	181	anti-parallel
Strand 4	A	187	189	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	217	first strand
Strand 2	A	220	225	anti-parallel
Strand 3	A	257	260	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	253	first strand
Strand 2	A	235	243	anti-parallel
Strand 3	A	268	277	anti-parallel
Strand 4	A	281	290	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	556	558	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	324	325	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	341	first strand
Strand 2	A	346	351	anti-parallel
Strand 3	A	354	359	anti-parallel
Strand 4	A	370	374	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	390	395	anti-parallel
Strand 3	A	398	403	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	432	436	anti-parallel
Strand 3	A	440	445	anti-parallel
Strand 4	A	457	461	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	471	first strand
Strand 2	A	476	481	anti-parallel
Strand 3	A	486	491	anti-parallel
Strand 4	A	498	499	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	515	first strand
Strand 2	A	518	522	anti-parallel
Strand 3	A	527	531	anti-parallel
Strand 4	A	534	538	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	578	first strand
Strand 2	A	583	588	anti-parallel
Strand 3	A	629	631	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	625	first strand
Strand 2	A	605	611	anti-parallel
Strand 3	A	640	648	anti-parallel
Strand 4	A	660	663	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	695	first strand
Strand 2	A	681	685	anti-parallel
Strand 3	A	673	678	anti-parallel
Strand 4	A	921	925	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	708	first strand
Strand 2	A	713	717	anti-parallel
Strand 3	A	722	725	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	748	750	first strand
Strand 2	A	755	758	anti-parallel
Strand 3	A	764	769	anti-parallel
Strand 4	A	775	780	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	791	first strand
Strand 2	A	796	801	anti-parallel
Strand 3	A	805	808	anti-parallel
Strand 4	A	816	819	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	828	835	first strand
Strand 2	A	840	846	anti-parallel
Strand 3	A	854	856	anti-parallel
Strand 4	A	869	870	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	885	887	first strand
Strand 2	A	890	894	anti-parallel
Strand 3	A	900	904	anti-parallel
Strand 4	A	911	912	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	953	956	first strand
Strand 2	A	960	964	anti-parallel
Strand 3	A	998	1002	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	988	994	first strand
Strand 2	A	977	983	anti-parallel
Strand 3	A	1012	1018	anti-parallel
Strand 4	A	1021	1022	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	988	994	first strand
Strand 2	A	977	983	anti-parallel
Strand 3	A	1012	1018	anti-parallel
Strand 4	A	1026	1028	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1041	1049	first strand
Strand 2	A	1059	1066	anti-parallel
Strand 3	A	1108	1114	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1075	1078	first strand
Strand 2	A	1126	1128	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1098	1100	first strand
Strand 2	A	1080	1085	anti-parallel
Strand 3	A	1119	1122	anti-parallel
Strand 4	A	1139	1142	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1169	1175	first strand
Strand 2	A	1159	1164	anti-parallel
Strand 3	A	1152	1156	anti-parallel
Strand 4	A	1423	1424	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1183	1184	first strand
Strand 2	A	1191	1196	anti-parallel
Strand 3	A	1199	1204	anti-parallel
Strand 4	A	1209	1215	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1222	1228	first strand
Strand 2	A	1233	1239	anti-parallel
Strand 3	A	1245	1251	anti-parallel
Strand 4	A	1260	1261	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1270	1277	first strand
Strand 2	A	1282	1289	anti-parallel
Strand 3	A	1292	1299	anti-parallel
Strand 4	A	1304	1307	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1331	1338	first strand
Strand 2	A	1346	1351	anti-parallel
Strand 3	A	1354	1358	anti-parallel
Strand 4	A	1365	1370	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1379	1384	first strand
Strand 2	A	1388	1394	anti-parallel
Strand 3	A	1399	1405	anti-parallel
Strand 4	A	1411	1416	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1449	1453	first strand
Strand 2	A	1458	1461	anti-parallel
Strand 3	A	1507	1510	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1499	1503	first strand
Strand 2	A	1480	1487	anti-parallel
Strand 3	A	1518	1526	anti-parallel
Strand 4	A	1542	1545	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1557	1561	first strand
Strand 2	A	1567	1571	anti-parallel
Strand 3	A	1612	1615	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1596	1602	first strand
Strand 2	A	1585	1590	anti-parallel
Strand 3	A	1624	1631	anti-parallel
Strand 4	A	1638	1640	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1596	1602	first strand
Strand 2	A	1585	1590	anti-parallel
Strand 3	A	1624	1631	anti-parallel
Strand 4	A	1644	1646	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	289	first strand
Strand 2	B	292	296	anti-parallel
Strand 3	B	300	305	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	320	first strand
Strand 2	B	329	336	anti-parallel
Strand 3	B	339	342	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	358	362	anti-parallel
Strand 3	B	365	369	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	385	first strand
Strand 2	B	394	395	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	415	first strand
Strand 2	B	420	423	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	430	first strand
Strand 2	B	438	440	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	460	first strand
Strand 2	B	463	468	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	474	first strand
Strand 2	B	480	482	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PWQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PWQ